Mathieu Blanchette, Eric Green, Webb Miller, David Haussler.
ERRATUM: The numbers reported Table 2 mistakenly refer to the differences between the genomes of living species and the reconstructed Euarchontoglires ancestor, not the reconstructed Boreoeutherian ancestor. The correct numbers for the Boreoeutherian ancestor are available HERE .1) Statistics comparing the simulated sequences to actual sequences are available here
2) Examples of simulated data sets with 20 species, together with the true and predicted ancestral sequences are available here (shift-click to "Save as...")
3) The alignment of the CFTR locus, together with the predicted ancestral sequence are available here (shift-click to "Save as...").