Human Gene DAO (R4760)
  Description: D-amino-acid oxidase
RefSeq Summary (NM_001917): This gene encodes the peroxisomal enzyme D-amino acid oxidase. The enzyme is a flavoprotein which uses flavin adenine dinucleotide (FAD) as its prosthetic group. Its substrates include a wide variety of D-amino acids, but it is inactive on the naturally occurring L-amino acids. Its biological function is not known; it may act as a detoxifying agent which removes D-amino acids that accumulate during aging. In mice, it degrades D-serine, a co-agonist of the NMDA receptor. This gene may play a role in the pathophysiology of schizophrenia. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg17 chr12:107,776,333-107,797,162 Size: 20,830 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg17 chr12:107,781,249-107,796,777 Size: 15,529 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesMethods
Data last updated at UCSC: 2005-06-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:107,776,333-107,797,162)mRNA (may differ from genome)Protein (347 aa)
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-  Comments and Description Text from UniProtKB
  ID: OXDA_HUMAN
DESCRIPTION: RecName: Full=D-amino-acid oxidase; Short=DAAO; Short=DAMOX; Short=DAO; EC=1.4.3.3;
FUNCTION: Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D- amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.
CATALYTIC ACTIVITY: A D-amino acid + H(2)O + O(2) = a 2-oxo acid + NH(3) + H(2)O(2).
COFACTOR: FAD.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=3.6 mM for D-serine; KM=1.7 mM for D-proline; KM=1.1 mM for D-tyrosine; KM=1.5 mM for D-DOPA; KM=1.2 mM for D-phenylalanine; KM=0.9 mM for D-alanine;
SUBUNIT: Homodimer.
SUBCELLULAR LOCATION: Peroxisome.
SIMILARITY: Belongs to the DAMOX/DASOX family.

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -52.70143-0.369 Picture PostScript Text
3' UTR -113.80385-0.296 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023209 - D-aa_oxidase
IPR006181 - D-amino_acid_oxidase_CS
IPR006076 - FAD-dep_OxRdtase
IPR016040 - NAD(P)-bd_dom

Pfam Domains:
PF01266 - FAD dependent oxidoreductase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DU8 - X-ray 2E48 - X-ray 2E49 - X-ray 2E4A - X-ray 2E82 - X-ray 2GNZ - Model 3CUK - X-ray 3G3E - X-ray


ModBase Predicted Comparative 3D Structure on P14920
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologGenome BrowserGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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Protein Sequence  Protein SequenceProtein Sequence 
Alignment  AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003884 D-amino-acid oxidase activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0016491 oxidoreductase activity
GO:0046983 protein dimerization activity
GO:0048037 cofactor binding
GO:0071949 FAD binding

Biological Process:
GO:0006562 proline catabolic process
GO:0006625 protein targeting to peroxisome
GO:0034641 cellular nitrogen compound metabolic process
GO:0036088 D-serine catabolic process
GO:0042416 dopamine biosynthetic process
GO:0046416 D-amino acid metabolic process
GO:0055114 oxidation-reduction process
GO:0055130 D-alanine catabolic process
GO:0070178 D-serine metabolic process

Cellular Component:
GO:0005777 peroxisome
GO:0005778 peroxisomal membrane
GO:0005782 peroxisomal matrix
GO:0005829 cytosol
GO:0005741 mitochondrial outer membrane


-  Descriptions from all associated GenBank mRNAs
  AX741659 - Sequence 6 from Patent WO02066672.
AX741657 - Sequence 4 from Patent WO02066672.
AX776480 - Sequence 4 from Patent WO03047558.
JD534900 - Sequence 515924 from Patent EP1572962.
AX741655 - Sequence 2 from Patent WO02066672.
AX776478 - Sequence 2 from Patent WO03047558.
AX786386 - Sequence 2 from Patent WO03050303.
AX741656 - Sequence 3 from Patent WO02066672.
AX741658 - Sequence 5 from Patent WO02066672.
AX776479 - Sequence 3 from Patent WO03047558.
AK312995 - Homo sapiens cDNA, FLJ93456, highly similar to Homo sapiens D-amino-acid oxidase (DAO), mRNA.
BX538210 - Homo sapiens mRNA; cDNA DKFZp686F04272 (from clone DKFZp686F04272); complete cds.
AX786389 - Sequence 5 from Patent WO03050303.
X13227 - Human mRNA for D-amino acid oxidase (EC 1.4.3.3).
JD462207 - Sequence 443231 from Patent EP1572962.
BC029057 - Homo sapiens D-amino-acid oxidase, mRNA (cDNA clone MGC:35381 IMAGE:5184628), complete cds.
JD438022 - Sequence 419046 from Patent EP1572962.
JD464058 - Sequence 445082 from Patent EP1572962.
BC074770 - Homo sapiens D-amino-acid oxidase, mRNA (cDNA clone MGC:103812 IMAGE:30915193), complete cds.
KJ891025 - Synthetic construct Homo sapiens clone ccsbBroadEn_00419 DAO gene, encodes complete protein.
DQ890839 - Synthetic construct clone IMAGE:100003469; FLH166366.01X; RZPDo839F1286D D-amino-acid oxidase (DAO) gene, encodes complete protein.
DQ893995 - Synthetic construct Homo sapiens clone IMAGE:100008455; FLH166362.01L; RZPDo839F1285D D-amino-acid oxidase (DAO) gene, encodes complete protein.
KU178015 - Homo sapiens D-amino-acid oxidase isoform 1 (DAO) mRNA, partial cds.
KU178016 - Homo sapiens D-amino-acid oxidase isoform 2 (DAO) mRNA, complete cds, alternatively spliced.
CU688594 - Synthetic construct Homo sapiens gateway clone IMAGE:100018160 5' read DAO mRNA.
JD382122 - Sequence 363146 from Patent EP1572962.
JD114634 - Sequence 95658 from Patent EP1572962.
JD113858 - Sequence 94882 from Patent EP1572962.
JD201085 - Sequence 182109 from Patent EP1572962.
JD495760 - Sequence 476784 from Patent EP1572962.
JD038438 - Sequence 19462 from Patent EP1572962.
JD168211 - Sequence 149235 from Patent EP1572962.
JD554366 - Sequence 535390 from Patent EP1572962.
JD328507 - Sequence 309531 from Patent EP1572962.
JD360816 - Sequence 341840 from Patent EP1572962.
JD075284 - Sequence 56308 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00260 - Glycine, serine and threonine metabolism
hsa00330 - Arginine and proline metabolism
hsa00472 - D-Arginine and D-ornithine metabolism
hsa01100 - Metabolic pathways
hsa04146 - Peroxisome

Reactome (by CSHL, EBI, and GO)

Protein P14920 (Reactome details) participates in the following event(s):

R-HSA-9033233 PEX5S,L binds cargo proteins containing PTS1
R-HSA-9033236 PEX5S,L:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-389821 glycine + O2 => glyoxylate + H2O2 + NH4+
R-HSA-9033241 Peroxisomal protein import
R-HSA-392499 Metabolism of proteins
R-HSA-389661 Glyoxylate metabolism and glycine degradation
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: AX741655, AX741656, AX776478, AX776479, AX786386, BC029057, BC074770, DAMOX
UCSC ID: NM_001917
RefSeq Accession: NM_001917
Protein: P14920 (aka OXDA_HUMAN)
CCDS: CCDS9122.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.