Human Gene ARL17B (uc002ikf.3)
  Description: Homo sapiens ADP-ribosylation factor-like 17A (ARL17B), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr17:44,363,862-44,417,140 Size: 53,279 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:44,363,862-44,417,140)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerGeneNetworkH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.25 RPKM in Cervix - Ectocervix
Total median expression: 36.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF119889 - Homo sapiens PRO2667 mRNA, complete cds.
AF493886 - Homo sapiens ADP-ribosylation factor-like protein variant (LOC51326) mRNA, complete cds.
AB209344 - Homo sapiens mRNA for ADP-ribosylation factor 7 variant protein.
BX647266 - Homo sapiens mRNA; cDNA DKFZp686J1482 (from clone DKFZp686J1482).
BC041803 - Homo sapiens ADP-ribosylation factor-like 17 pseudogene 1, mRNA (cDNA clone MGC:41814 IMAGE:5303659), complete cds.
BC030570 - Homo sapiens ADP-ribosylation factor-like 17, mRNA (cDNA clone MGC:45095 IMAGE:5518676), complete cds.
AK289590 - Homo sapiens cDNA FLJ76374 complete cds, highly similar to Homo sapiens ADP-ribosylation factor-like 17 pseudogene 1, mRNA.
AK315857 - Homo sapiens cDNA, FLJ79506 complete cds, highly similar to ADP-ribosylation factor-like protein 14.
KJ902581 - Synthetic construct Homo sapiens clone ccsbBroadEn_11975 ARL17A gene, encodes complete protein.
BC000924 - Homo sapiens ADP-ribosylation factor-like 17, mRNA (cDNA clone IMAGE:3446931), partial cds.
BC071681 - Homo sapiens ADP-ribosylation factor-like protein, mRNA (cDNA clone IMAGE:3907731).
BT007332 - Homo sapiens NBR2 mRNA, complete cds.
KJ904753 - Synthetic construct Homo sapiens clone ccsbBroadEn_14147 ARL17A gene, encodes complete protein.
JD358948 - Sequence 339972 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ARL17A, BC000924
UCSC ID: uc002ikf.3
RefSeq Accession: NM_016632

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC000924.3
exon count: 4CDS single in 3' UTR: no RNA size: 995
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 226.00frame shift in genome: no % Coverage: 98.49
has start codon: no stop codon in genome: no # of Alignments: 4
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.