Human Gene CMSS1 (uc003dtk.2)
  Description: Homo sapiens cms1 ribosomal small subunit homolog (yeast) (CMSS1), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr3:99,536,678-99,760,237 Size: 223,560 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:99,536,678-99,760,237)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVHGNCLynx
MalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CMSS1
Diseases sorted by gene-association score: refractive error (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.53 RPKM in Testis
Total median expression: 233.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK312483 - Homo sapiens cDNA, FLJ92842.
BC006475 - Homo sapiens chromosome 3 open reading frame 26, mRNA (cDNA clone MGC:4308 IMAGE:2819663), complete cds.
BC006512 - Homo sapiens chromosome 3 open reading frame 26, mRNA (cDNA clone MGC:2679 IMAGE:2819663), complete cds.
AK291392 - Homo sapiens cDNA FLJ78042 complete cds.
AK124387 - Homo sapiens cDNA FLJ42396 fis, clone ASTRO2001107.
BC071745 - Homo sapiens cDNA clone IMAGE:30414752, partial cds.
CU675421 - Synthetic construct Homo sapiens gateway clone IMAGE:100018708 5' read C3orf26 mRNA.
HQ447391 - Synthetic construct Homo sapiens clone IMAGE:100070712; CCSB004451_04 chromosome 3 open reading frame 26 (C3orf26) gene, encodes complete protein.
KJ899787 - Synthetic construct Homo sapiens clone ccsbBroadEn_09181 C3orf26 gene, encodes complete protein.
JD376442 - Sequence 357466 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC071745
UCSC ID: uc003dtk.2
RefSeq Accession: NM_032359

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC071745.1
exon count: 5CDS single in 3' UTR: no RNA size: 2175
ORF size: 0CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 70.00frame shift in genome: no % Coverage: 98.48
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.