Human Gene PSME3IP1 (uc021tix.1)
  Description: Homo sapiens family with sequence similarity 192, member A (PSME3IP1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:57,186,378-57,201,162 Size: 14,785 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:57,186,378-57,201,162)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVLynxPubMed
TreefamWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.37 RPKM in Testis
Total median expression: 950.65 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK023291 - Homo sapiens cDNA FLJ13229 fis, clone OVARC1000106.
JD292115 - Sequence 273139 from Patent EP1572962.
JD065792 - Sequence 46816 from Patent EP1572962.
JD432754 - Sequence 413778 from Patent EP1572962.
JD555575 - Sequence 536599 from Patent EP1572962.
JD449418 - Sequence 430442 from Patent EP1572962.
JD093012 - Sequence 74036 from Patent EP1572962.
AK025452 - Homo sapiens cDNA: FLJ21799 fis, clone HEP00611.
AF271785 - Homo sapiens CDA018 mRNA, complete cds.
AF212249 - Homo sapiens CDA10 mRNA, complete cds.
AF356585 - Homo sapiens NEFA-interacting nuclear protein NIP30 (NIP30) mRNA, complete cds.
BC071952 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone MGC:88642 IMAGE:6305656), complete cds.
BC063409 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone IMAGE:5211300), complete cds.
JD424735 - Sequence 405759 from Patent EP1572962.
JD354478 - Sequence 335502 from Patent EP1572962.
JD156683 - Sequence 137707 from Patent EP1572962.
JD301429 - Sequence 282453 from Patent EP1572962.
JD450293 - Sequence 431317 from Patent EP1572962.
JD547242 - Sequence 528266 from Patent EP1572962.
JD144978 - Sequence 126002 from Patent EP1572962.
JD501928 - Sequence 482952 from Patent EP1572962.
BC020536 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone MGC:21022 IMAGE:3849620), complete cds.
AL834421 - Homo sapiens mRNA; cDNA DKFZp667A136 (from clone DKFZp667A136).
DQ891689 - Synthetic construct clone IMAGE:100004319; FLH180046.01X; RZPDo839F04132D NEFA-interacting nuclear protein NIP30 (NIP30) gene, encodes complete protein.
KJ894770 - Synthetic construct Homo sapiens clone ccsbBroadEn_04164 FAM192A gene, encodes complete protein.
DQ894983 - Synthetic construct Homo sapiens clone IMAGE:100009443; FLH180043.01L; RZPDo839F04131D NEFA-interacting nuclear protein NIP30 (NIP30) gene, encodes complete protein.
AB528823 - Synthetic construct DNA, clone: pF1KE0417, Homo sapiens NIP30 gene for family with sequence similarity 192, member A, without stop codon, in Flexi system.
AM393111 - Synthetic construct Homo sapiens clone IMAGE:100001874 for hypothetical protein (NIP30 gene).
AM393361 - Synthetic construct Homo sapiens clone IMAGE:100001867 for hypothetical protein (NIP30 gene).

-  Other Names for This Gene
  Alternate Gene Symbols: BC063409, FAM192A
UCSC ID: uc021tix.1
RefSeq Accession: NM_024946

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC063409.1
exon count: 3CDS single in 3' UTR: no RNA size: 1490
ORF size: 0CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: 509.00frame shift in genome: no % Coverage: 66.78
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 24# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.