Human Gene MARCHF10 (uc002jag.4)
  Description: Homo sapiens membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase (MARCHF10), transcript variant 1, mRNA.
RefSeq Summary (NM_152598): MARCH10 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH enzymes add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments (Morokuma et al., 2007 [PubMed 17604280]).[supplied by OMIM, Apr 2010].
Transcript (Including UTRs)
   Position: hg19 chr17:60,778,675-60,885,705 Size: 107,031 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr17:60,779,064-60,879,096 Size: 100,033 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:60,778,675-60,885,705)mRNA (may differ from genome)Protein (808 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHPRDLynxMGIneXtProtOMIM
PubMedTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MARHA_HUMAN
DESCRIPTION: RecName: Full=Probable E3 ubiquitin-protein ligase MARCH10; EC=6.3.2.-; AltName: Full=Membrane-associated RING finger protein 10; AltName: Full=Membrane-associated RING-CH protein X; Short=MARCH-X; AltName: Full=RING finger protein 190;
FUNCTION: E3 ubiquitin-protein ligase (Probable). E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.
PATHWAY: Protein modification; protein ubiquitination.
DOMAIN: The RING-CH-type zinc finger domain is required for E3 ligase activity (By similarity).
SIMILARITY: Contains 1 RING-CH-type zinc finger.
SEQUENCE CAUTION: Sequence=AAH35021.1; Type=Erroneous termination; Positions=658; Note=Translated as Leu; Sequence=BAC05079.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 49.45 RPKM in Testis
Total median expression: 60.30 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -133.12285-0.467 Picture PostScript Text
3' UTR -138.31389-0.356 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011016 - Znf_RING-CH
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF12906 - RING-variant domain

SCOP Domains:
57850 - RING/U-box

ModBase Predicted Comparative 3D Structure on Q8NA82
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0016567 protein ubiquitination


-  Descriptions from all associated GenBank mRNAs
  HM005641 - Homo sapiens clone HTL-S-228n testis secretory sperm-binding protein Li 228n mRNA, complete cds.
BC035021 - Homo sapiens membrane-associated ring finger (C3HC4) 10, mRNA (cDNA clone MGC:33596 IMAGE:4824637), complete cds.
AK093076 - Homo sapiens cDNA FLJ35757 fis, clone TESTI2004689, moderately similar to Mus musculus axotrophin mRNA.
AX747906 - Sequence 1431 from Patent EP1308459.
BX648705 - Homo sapiens mRNA; cDNA DKFZp686P0339 (from clone DKFZp686P0339).
AK122947 - Homo sapiens cDNA FLJ16660 fis, clone TESTI4042440, moderately similar to Mus musculus axotrophin (Axot).
KJ905025 - Synthetic construct Homo sapiens clone ccsbBroadEn_14419 MARCH10 gene, encodes complete protein.
CU690026 - Synthetic construct Homo sapiens gateway clone IMAGE:100018395 5' read MARCH10 mRNA.
JD271679 - Sequence 252703 from Patent EP1572962.
JD311591 - Sequence 292615 from Patent EP1572962.
JD470898 - Sequence 451922 from Patent EP1572962.
JD309921 - Sequence 290945 from Patent EP1572962.
AK097506 - Homo sapiens cDNA FLJ40187 fis, clone TESTI2018941, moderately similar to Mus musculus axotrophin mRNA.
JD214766 - Sequence 195790 from Patent EP1572962.
JD434747 - Sequence 415771 from Patent EP1572962.
JD393591 - Sequence 374615 from Patent EP1572962.
JD128823 - Sequence 109847 from Patent EP1572962.
JD184620 - Sequence 165644 from Patent EP1572962.
JD066984 - Sequence 48008 from Patent EP1572962.
JD436607 - Sequence 417631 from Patent EP1572962.
JD042683 - Sequence 23707 from Patent EP1572962.
JD206228 - Sequence 187252 from Patent EP1572962.
JD374306 - Sequence 355330 from Patent EP1572962.
JD044460 - Sequence 25484 from Patent EP1572962.
JD437406 - Sequence 418430 from Patent EP1572962.
JD408696 - Sequence 389720 from Patent EP1572962.
JD406923 - Sequence 387947 from Patent EP1572962.
JD458946 - Sequence 439970 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DU09, MARCH10, MARHA_HUMAN, NM_152598, NP_689811, Q8IYS7, Q8N7Z7, Q8NA82, RNF190
UCSC ID: uc002jag.4
RefSeq Accession: NM_152598
Protein: Q8NA82 (aka MARHA_HUMAN)
CCDS: CCDS11635.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_152598.2
exon count: 11CDS single in 3' UTR: no RNA size: 3116
ORF size: 2427CDS single in intron: no Alignment % ID: 99.97
txCdsPredict score: 4997.00frame shift in genome: no % Coverage: 99.52
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.