Human Gene PCID2 (uc031qnm.1) Description and Page Index
  Description: Homo sapiens PCI domain containing 2 (PCID2), transcript variant 4, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr13:113,831,853-113,863,029 Size: 31,177 Total Exon Count: 15 Strand: -
Coding Region
   Position: hg19 chr13:113,832,512-113,862,948 Size: 30,437 Coding Exon Count: 14 

Page IndexSequence and LinksMalaCardsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:113,831,853-113,863,029)mRNA (may differ from genome)Protein (453 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerGeneCardsH-INV
HGNCLynxMGIPubMedStanford SOURCEUniProtKB

-  MalaCards Disease Associations
  MalaCards Gene Search: PCID2
Diseases sorted by gene-association score: noonan syndrome 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.02 RPKM in Testis
Total median expression: 446.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -34.7081-0.428 Picture PostScript Text
3' UTR -109.93494-0.223 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF01399 - PCI domain

ModBase Predicted Comparative 3D Structure on Q5JVF3-4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
 Gene Details    
 Gene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK001185 - Homo sapiens cDNA FLJ10323 fis, clone NT2RM2000540.
BC016614 - Homo sapiens PCI domain containing 2, mRNA (cDNA clone MGC:8832 IMAGE:3869275), complete cds.
LF384332 - JP 2014500723-A/191835: Polycomb-Associated Non-Coding RNAs.
AK024478 - Homo sapiens mRNA for FLJ00071 protein, partial cds.
AK098706 - Homo sapiens cDNA FLJ25840 fis, clone TST08629, highly similar to Homo sapiens HT004 protein mRNA.
AK002167 - Homo sapiens cDNA FLJ11305 fis, clone PLACE1010023.
AK000888 - Homo sapiens cDNA FLJ10026 fis, clone HEMBA1000686.
AK023313 - Homo sapiens cDNA FLJ13251 fis, clone OVARC1000730.
AF183426 - Homo sapiens HT004 protein mRNA, complete cds.
AK001302 - Homo sapiens cDNA FLJ10440 fis, clone NT2RP1000695.
BC031246 - Homo sapiens PCI domain containing 2, mRNA (cDNA clone MGC:39643 IMAGE:5266649), complete cds.
AK289462 - Homo sapiens cDNA FLJ78373 complete cds, highly similar to Homo sapiens PCI domain containing 2, mRNA.
JD389733 - Sequence 370757 from Patent EP1572962.
KJ899195 - Synthetic construct Homo sapiens clone ccsbBroadEn_08589 PCID2 gene, encodes complete protein.
AK097025 - Homo sapiens cDNA FLJ39706 fis, clone SMINT2012501.
CU677649 - Synthetic construct Homo sapiens gateway clone IMAGE:100017188 5' read PCID2 mRNA.
LF371281 - JP 2014500723-A/178784: Polycomb-Associated Non-Coding RNAs.
LF371282 - JP 2014500723-A/178785: Polycomb-Associated Non-Coding RNAs.
AK309321 - Homo sapiens cDNA, FLJ99362.
MA619909 - JP 2018138019-A/191835: Polycomb-Associated Non-Coding RNAs.
MA606858 - JP 2018138019-A/178784: Polycomb-Associated Non-Coding RNAs.
MA606859 - JP 2018138019-A/178785: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: HT004, NM_001258212, NP_001245141, Q5JVF3-4, uc021rmt.1
UCSC ID: uc031qnm.1
RefSeq Accession: NM_001258212
Protein: Q5JVF3-4, splice isoform of Q5JVF3 CCDS: CCDS58302.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001258212.1
exon count: 15CDS single in 3' UTR: no RNA size: 1937
ORF size: 1362CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2924.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.