Human Gene TRPM8 (uc002vvh.3)
  Description: Homo sapiens transient receptor potential cation channel, subfamily M, member 8 (TRPM8), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr2:234,826,043-234,928,166 Size: 102,124 Total Exon Count: 26 Strand: +
Coding Region
   Position: hg19 chr2:234,835,183-234,923,256 Size: 88,074 Coding Exon Count: 24 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:234,826,043-234,928,166)mRNA (may differ from genome)Protein (1104 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TRPM8_HUMAN
DESCRIPTION: RecName: Full=Transient receptor potential cation channel subfamily M member 8; AltName: Full=Long transient receptor potential channel 6; Short=LTrpC-6; Short=LTrpC6; AltName: Full=Transient receptor potential p8; Short=Trp-p8;
FUNCTION: Receptor-activated non-selective cation channel involved in detection of sensations such as coolness, by being activated by cold temperature below 25 degrees Celsius. Activated by icilin, eucalyptol, menthol, cold and modulation of intracellular pH. Involved in menthol sensation. Permeable for monovalent cations sodium, potassium, and cesium and divalent cation calcium. Temperature sensing is tightly linked to voltage-dependent gating. Activated upon depolarization, changes in temperature resulting in graded shifts of its voltage-dependent activation curves. The chemical agonists menthol functions as a gating modifier, shifting activation curves towards physiological membrane potentials. Temperature sensitivity arises from a tenfold difference in the activation energies associated with voltage-dependent opening and closing.
SUBUNIT: Homotetramer (By similarity).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Probable).
TISSUE SPECIFICITY: Expressed in prostate. Also expressed in most in prostate tumors. Also expressed in non-prostatic primary tumors such as colon, lung, breast and skin tumors.
MISCELLANEOUS: The sensation of coolness triggered by eucalyptol or menthol may be explained by the fact that menthol and cool temperatures sensations are detected by this protein.
MISCELLANEOUS: Its expression in most prostate tumors as well as the presence of an immunogenic epitope suggest that it may be suitable for the design of peptide vaccination strategies for prostate cancers.
SIMILARITY: Belongs to the transient receptor (TC 1.A.4) family. LTrpC subfamily. TRPM8 sub-subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TRPM8
CDC HuGE Published Literature: TRPM8
Positive Disease Associations: Migraine Disorders
Related Studies:
  1. Migraine Disorders
    Daniel I Chasman et al. Nature genetics 2011, Genome-wide association study reveals three susceptibility loci for common migraine in the general population., Nature genetics. [PubMed 21666692]

-  MalaCards Disease Associations
  MalaCards Gene Search: TRPM8
Diseases sorted by gene-association score: prostate cancer (7), dentin sensitivity (3), migraine with or without aura 1 (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D008610 Menthol
  • C490483 icilin
  • D002118 Calcium
  • C475772 N-(4-tert-butylphenyl)-4-(3-chloropyridin-2-yl)tetrahydropyrazine-1(2H)-carboxamide
  • C060229 1-(6-((3-methoxyestra-1,3,5(10)-trien-17-yl)amino)hexyl)-1H-pyrrole-2,5-dione
  • C009505 4,4'-diaminodiphenylmethane
  • C068314 6-(bromomethylene)tetrahydro-3-(1-naphthaleneyl)-2H-pyran-2-one
  • D000082 Acetaminophen
  • D000096 Acetone
  • D000643 Ammonium Chloride
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.98 RPKM in Prostate
Total median expression: 12.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.5040-0.237 Picture PostScript Text
3' UTR -567.842266-0.251 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005821 - Ion_trans_dom

Pfam Domains:
PF00520 - Ion transport protein

ModBase Predicted Comparative 3D Structure on Q7Z2W7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005216 ion channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding
GO:0042803 protein homodimerization activity

Biological Process:
GO:0006811 ion transport
GO:0006812 cation transport
GO:0006816 calcium ion transport
GO:0006874 cellular calcium ion homeostasis
GO:0009266 response to temperature stimulus
GO:0009409 response to cold
GO:0016048 detection of temperature stimulus
GO:0050896 response to stimulus
GO:0050951 sensory perception of temperature stimulus
GO:0050955 thermoception
GO:0051289 protein homotetramerization
GO:0055085 transmembrane transport
GO:0070207 protein homotrimerization
GO:0070588 calcium ion transmembrane transport

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005886 plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0045121 membrane raft


-  Descriptions from all associated GenBank mRNAs
  KJ903144 - Synthetic construct Homo sapiens clone ccsbBroadEn_12538 TRPM8 gene, encodes complete protein.
KT341010 - Homo sapiens transient receptor melastatin 8 variant 11 (TRPM8) mRNA, complete cds.
KT341009 - Homo sapiens transient receptor melastatin 8 variant 10 (TRPM8) mRNA, complete cds.
KC692993 - Homo sapiens transient receptor melastatin 8 (TRPM8) mRNA, complete cds.
AY090109 - Homo sapiens transient receptor potential cation channel protein (TRPM8) mRNA, complete cds.
BC143819 - Homo sapiens cDNA clone IMAGE:9052334.
BC126342 - Homo sapiens transient receptor potential cation channel, subfamily M, member 8, mRNA (cDNA clone MGC:161620 IMAGE:8992058), complete cds.
AY328400 - Homo sapiens transient receptor potential subfamily M member 8 variant (TRPM8) mRNA, complete cds.
DQ139309 - Homo sapiens transient receptor potential subfamily M member 8 (TRPM8) mRNA, complete cds.
AB061779 - Homo sapiens mRNA for LTRPC6, complete cds.
KT341012 - Homo sapiens transient receptor melastatin 8 variant 13 (TRPM8) mRNA, complete cds.
KT341011 - Homo sapiens transient receptor melastatin 8 variant 12 (TRPM8) mRNA, complete cds.
KT341013 - Homo sapiens transient receptor melastatin 8 variant 14 (TRPM8) mRNA, complete cds.
KT341014 - Homo sapiens transient receptor melastatin 8 variant 15 (TRPM8) mRNA, complete cds.
KT341019 - Homo sapiens transient receptor melastatin 8 variant 20 (TRPM8) mRNA, complete cds.
KT341015 - Homo sapiens transient receptor melastatin 8 variant 16 (TRPM8) mRNA, complete cds.
KT341016 - Homo sapiens transient receptor melastatin 8 variant 17 (TRPM8) mRNA, complete cds.
KT341017 - Homo sapiens transient receptor melastatin 8 variant 18 (TRPM8) mRNA, complete cds.
KT341018 - Homo sapiens transient receptor melastatin 8 variant 19 (TRPM8) mRNA, complete cds.
KT341020 - Homo sapiens transient receptor melastatin 8 variant 21 (TRPM8) mRNA, complete cds.
HQ258493 - Synthetic construct Homo sapiens clone IMAGE:100072922 Unknown protein gene, encodes complete protein.
KT341021 - Homo sapiens transient receptor melastatin 8 variant 22 (TRPM8) mRNA, complete cds.
KT341022 - Homo sapiens transient receptor melastatin 8 variant 23 (TRPM8) mRNA, complete cds.
KC692994 - Homo sapiens TRPM8 isoform, 40kDa channel protein (TRPM8) mRNA, complete cds.
KC692995 - Homo sapiens TRPM8 isoform 51kDa channel protein (TRPM8) mRNA, complete cds.
KT341023 - Homo sapiens transient receptor melastatin 8 variant 24 (TRPM8) mRNA, complete cds.
KT341026 - Homo sapiens nonfunctional transient receptor melastatin 8 variant 27 (TRPM8) mRNA, complete sequence.
KT341024 - Homo sapiens transient receptor melastatin 8 variant 25 (TRPM8) mRNA, complete cds.
KT341025 - Homo sapiens transient receptor melastatin 8 variant 26 (TRPM8) mRNA, complete cds.
KJ903143 - Synthetic construct Homo sapiens clone ccsbBroadEn_12537 TRPM8 gene, encodes complete protein.
KT341002 - Homo sapiens transient receptor melastatin 8 variant 3 (TRPM8) mRNA, complete cds.
JD042318 - Sequence 23342 from Patent EP1572962.
KT341003 - Homo sapiens transient receptor melastatin 8 variant 4 (TRPM8) mRNA, complete cds.
KT341004 - Homo sapiens transient receptor melastatin 8 variant 5 (TRPM8) mRNA, complete cds.
KT341005 - Homo sapiens transient receptor melastatin 8 variant 6 (TRPM8) mRNA, complete cds.
BC001135 - Homo sapiens transient receptor potential cation channel, subfamily M, member 8, mRNA (cDNA clone IMAGE:2967357), complete cds.
AY532375 - Homo sapiens short transient receptor potential subfamily M member 8, variant alpha (TRPM8) mRNA, complete cds, alternatively spliced.
AY532376 - Homo sapiens short transient receptor potential subfamily M member 8, variant beta (TRPM8) mRNA, complete cds, alternatively spliced.
KT341006 - Homo sapiens nonfunctional transient receptor melastatin 8 variant 7 (TRPM8) mRNA, complete sequence.
KT341007 - Homo sapiens transient receptor melastatin 8 variant 8 (TRPM8) mRNA, complete cds.
CU674574 - Synthetic construct Homo sapiens gateway clone IMAGE:100018011 5' read TRPM8 mRNA.
KT341008 - Homo sapiens nonfunctional transient receptor melastatin 8 variant 9 (TRPM8) mRNA, complete sequence.
FJ895300 - Homo sapiens TRPM8 (TRPM8) mRNA, partial cds.
KT341027 - Homo sapiens transient receptor melastatin 8 variant 28 (TRPM8) mRNA, complete cds.
KT341028 - Homo sapiens transient receptor melastatin 8 variant 29 isoform 35kDa (TRPM8) mRNA, complete cds.
KT341029 - Homo sapiens transient receptor melastatin 8 variant 29 isoform 27kDa (TRPM8) mRNA, complete cds.
KT341030 - Homo sapiens transient receptor melastatin 8 variant 30 (TRPM8) mRNA, complete cds.
KT341031 - Homo sapiens transient receptor melastatin 8 variant 31 (TRPM8) mRNA, complete cds.
KT341032 - Homo sapiens transient receptor melastatin 8 variant 32 isoform 35kDa (TRPM8) mRNA, complete cds.
KT341033 - Homo sapiens transient receptor melastatin 8 variant 32 isoform 27kDa (TRPM8) mRNA, complete cds.
KT341034 - Homo sapiens transient receptor melastatin 8 variant 33 (TRPM8) mRNA, complete cds.
KT341035 - Homo sapiens transient receptor melastatin 8 variant 34 (TRPM8) mRNA, complete cds.
AK303811 - Homo sapiens cDNA FLJ56776 complete cds, highly similar to Transient receptor potential cation channel subfamily M member 8.
BC033137 - Homo sapiens, Similar to transient receptor potential cation channel, subfamily M, member 8, clone IMAGE:3638172, mRNA.
JD510427 - Sequence 491451 from Patent EP1572962.
JD442227 - Sequence 423251 from Patent EP1572962.
JD248119 - Sequence 229143 from Patent EP1572962.
JD146543 - Sequence 127567 from Patent EP1572962.
JD245211 - Sequence 226235 from Patent EP1572962.
JD412575 - Sequence 393599 from Patent EP1572962.
JD354884 - Sequence 335908 from Patent EP1572962.
JD350494 - Sequence 331518 from Patent EP1572962.
JD245028 - Sequence 226052 from Patent EP1572962.
JD333661 - Sequence 314685 from Patent EP1572962.
JD285958 - Sequence 266982 from Patent EP1572962.
JD478919 - Sequence 459943 from Patent EP1572962.
JD474077 - Sequence 455101 from Patent EP1572962.
JD551601 - Sequence 532625 from Patent EP1572962.
JD503258 - Sequence 484282 from Patent EP1572962.
JD299665 - Sequence 280689 from Patent EP1572962.
JD105577 - Sequence 86601 from Patent EP1572962.
JD158783 - Sequence 139807 from Patent EP1572962.
JD275645 - Sequence 256669 from Patent EP1572962.
JD208628 - Sequence 189652 from Patent EP1572962.
JD378622 - Sequence 359646 from Patent EP1572962.
JD545206 - Sequence 526230 from Patent EP1572962.
JD283441 - Sequence 264465 from Patent EP1572962.
JD238334 - Sequence 219358 from Patent EP1572962.
JD047539 - Sequence 28563 from Patent EP1572962.
JD479527 - Sequence 460551 from Patent EP1572962.
JD091991 - Sequence 73015 from Patent EP1572962.
JD292377 - Sequence 273401 from Patent EP1572962.
JD534407 - Sequence 515431 from Patent EP1572962.
JD451484 - Sequence 432508 from Patent EP1572962.
JD364510 - Sequence 345534 from Patent EP1572962.
JD318867 - Sequence 299891 from Patent EP1572962.
JD366189 - Sequence 347213 from Patent EP1572962.
JD517170 - Sequence 498194 from Patent EP1572962.
JD517171 - Sequence 498195 from Patent EP1572962.
JD168689 - Sequence 149713 from Patent EP1572962.
JD039713 - Sequence 20737 from Patent EP1572962.
JD327036 - Sequence 308060 from Patent EP1572962.
JD547542 - Sequence 528566 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q7Z2W7 (Reactome details) participates in the following event(s):

R-HSA-3295579 TRPs transport extracellular Ca2+ to cytosol
R-HSA-3295583 TRP channels
R-HSA-2672351 Stimuli-sensing channels
R-HSA-983712 Ion channel transport
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: LTRPC6, NM_024080, NP_076985, Q6QNH9, Q7Z2W7, Q8TAC3, Q8TDX8, Q9BVK1, TRPM8_HUMAN, TRPP8
UCSC ID: uc002vvh.3
RefSeq Accession: NM_024080
Protein: Q7Z2W7 (aka TRPM8_HUMAN)
CCDS: CCDS33407.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_024080.4
exon count: 26CDS single in 3' UTR: no RNA size: 5621
ORF size: 3315CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 6500.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.