Human Gene MTMR9LP (uc001buv.4)
  Description: Homo sapiens myotubularin related protein 9-like, pseudogene (MTMR9LP), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:32,697,261-32,707,311 Size: 10,051 Total Exon Count: 9 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:32,697,261-32,707,311)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.27 RPKM in Pituitary
Total median expression: 390.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK096109 - Homo sapiens cDNA FLJ38790 fis, clone LIVER2002842.
BC041632 - Homo sapiens myotubularin related protein 9 pseudogene, mRNA (cDNA clone IMAGE:4872239).
BC016171 - Homo sapiens hypothetical LOC339483, mRNA (cDNA clone IMAGE:3536536).
AL833686 - Homo sapiens mRNA; cDNA DKFZp667B148 (from clone DKFZp667B148).
AK055560 - Homo sapiens cDNA FLJ30998 fis, clone HLUNG1000105, weakly similar to MYOTUBULARIN.
JD508071 - Sequence 489095 from Patent EP1572962.
JD462084 - Sequence 443108 from Patent EP1572962.
JD298577 - Sequence 279601 from Patent EP1572962.
JD423246 - Sequence 404270 from Patent EP1572962.
JD104008 - Sequence 85032 from Patent EP1572962.
JD276019 - Sequence 257043 from Patent EP1572962.
JD037978 - Sequence 19002 from Patent EP1572962.
JD213183 - Sequence 194207 from Patent EP1572962.
JD020959 - Sequence 1983 from Patent EP1572962.
JD163134 - Sequence 144158 from Patent EP1572962.
JD163133 - Sequence 144157 from Patent EP1572962.
JD036063 - Sequence 17087 from Patent EP1572962.
JD420929 - Sequence 401953 from Patent EP1572962.
JD407694 - Sequence 388718 from Patent EP1572962.
JD165500 - Sequence 146524 from Patent EP1572962.
JD023624 - Sequence 4648 from Patent EP1572962.
JD029108 - Sequence 10132 from Patent EP1572962.
JD464087 - Sequence 445111 from Patent EP1572962.
JD027422 - Sequence 8446 from Patent EP1572962.
JD032555 - Sequence 13579 from Patent EP1572962.
JD185455 - Sequence 166479 from Patent EP1572962.
JD534895 - Sequence 515919 from Patent EP1572962.
JD487943 - Sequence 468967 from Patent EP1572962.
JD427050 - Sequence 408074 from Patent EP1572962.
JD135441 - Sequence 116465 from Patent EP1572962.
JD523164 - Sequence 504188 from Patent EP1572962.
JD289152 - Sequence 270176 from Patent EP1572962.
JD487991 - Sequence 469015 from Patent EP1572962.
JD055031 - Sequence 36055 from Patent EP1572962.
JD226596 - Sequence 207620 from Patent EP1572962.
JD407417 - Sequence 388441 from Patent EP1572962.
JD479887 - Sequence 460911 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AL833686
UCSC ID: uc001buv.4
RefSeq Accession: NR_026850

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AL833686.1
exon count: 9CDS single in 3' UTR: no RNA size: 2674
ORF size: 0CDS single in intron: no Alignment % ID: 99.66
txCdsPredict score: 219.00frame shift in genome: no % Coverage: 98.13
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.