Human Gene ERMAP (uc001cid.1)
  Description: Homo sapiens erythroblast membrane-associated protein (Scianna blood group) (ERMAP), transcript variant 1, mRNA.
RefSeq Summary (NM_001017922): The protein encoded by this gene is a cell surface transmembrane protein that may act as an erythroid cell receptor, possibly as a mediator of cell adhesion. Polymorphisms in this gene are responsible for the Scianna/Radin blood group system. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr1:43,282,776-43,310,660 Size: 27,885 Total Exon Count: 11 Strand: +


Page IndexSequence and LinksPrimersGenetic AssociationsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:43,282,776-43,310,660)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ERMAP
CDC HuGE Published Literature: ERMAP

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.63 RPKM in Pituitary
Total median expression: 206.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK314436 - Homo sapiens cDNA, FLJ95234.
AK125447 - Homo sapiens cDNA FLJ43458 fis, clone OCBBF2035390.
AK056138 - Homo sapiens cDNA FLJ31576 fis, clone NT2RI2001866, moderately similar to Mus musculus erythroid membrane-associated protein ERMAP mRNA.
AK295704 - Homo sapiens cDNA FLJ55212 complete cds, highly similar to Erythroid membrane-associated protein precursor.
AY049028 - Homo sapiens erythroid membrane-associated protein mRNA, complete cds.
AF311285 - Homo sapiens clone D19-2g erythroid membrane-associated protein mRNA, complete cds.
JD126531 - Sequence 107555 from Patent EP1572962.
BC099703 - Homo sapiens erythroblast membrane-associated protein (Scianna blood group), mRNA (cDNA clone MGC:118810 IMAGE:40000626), complete cds.
BC099707 - Homo sapiens erythroblast membrane-associated protein (Scianna blood group), transcript variant 1, mRNA (cDNA clone MGC:118811 IMAGE:40000628), complete cds.
BC099712 - Homo sapiens erythroblast membrane-associated protein (Scianna blood group), mRNA (cDNA clone MGC:118812 IMAGE:40000629), complete cds.
BC099713 - Homo sapiens erythroblast membrane-associated protein (Scianna blood group), transcript variant 1, mRNA (cDNA clone MGC:118813 IMAGE:40000630), complete cds.
BX537371 - Homo sapiens mRNA; cDNA DKFZp686J23132 (from clone DKFZp686J23132).
AB590602 - Synthetic construct DNA, clone: pFN21AE1936, Homo sapiens ERMAP gene for erythroblast membrane-associated protein, without stop codon, in Flexi system.
KJ895264 - Synthetic construct Homo sapiens clone ccsbBroadEn_04658 ERMAP gene, encodes complete protein.
KR711483 - Synthetic construct Homo sapiens clone CCSBHm_00024345 ERMAP (ERMAP) mRNA, encodes complete protein.
KR711484 - Synthetic construct Homo sapiens clone CCSBHm_00024346 ERMAP (ERMAP) mRNA, encodes complete protein.
KR711485 - Synthetic construct Homo sapiens clone CCSBHm_00024347 ERMAP (ERMAP) mRNA, encodes complete protein.
AF311284 - Homo sapiens clone 1 erythroid membrane-associated protein mRNA, partial cds.
JD053089 - Sequence 34113 from Patent EP1572962.
JD110962 - Sequence 91986 from Patent EP1572962.
JD381918 - Sequence 362942 from Patent EP1572962.
AF119899 - Homo sapiens PRO2801 mRNA, complete cds.
JD324275 - Sequence 305299 from Patent EP1572962.
JD351419 - Sequence 332443 from Patent EP1572962.
JD378476 - Sequence 359500 from Patent EP1572962.
JD553880 - Sequence 534904 from Patent EP1572962.
JD088549 - Sequence 69573 from Patent EP1572962.
JD372968 - Sequence 353992 from Patent EP1572962.
JD209923 - Sequence 190947 from Patent EP1572962.
BC031548 - Homo sapiens erythroblast membrane-associated protein (Scianna blood group), mRNA (cDNA clone IMAGE:4346875).
JD065903 - Sequence 46927 from Patent EP1572962.
JD515829 - Sequence 496853 from Patent EP1572962.
JD558059 - Sequence 539083 from Patent EP1572962.
JD175380 - Sequence 156404 from Patent EP1572962.
JD281523 - Sequence 262547 from Patent EP1572962.
JD041816 - Sequence 22840 from Patent EP1572962.
JD067251 - Sequence 48275 from Patent EP1572962.
JD377478 - Sequence 358502 from Patent EP1572962.
JD202510 - Sequence 183534 from Patent EP1572962.
JD471257 - Sequence 452281 from Patent EP1572962.
JD250491 - Sequence 231515 from Patent EP1572962.
JD377192 - Sequence 358216 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK125447
UCSC ID: uc001cid.1
RefSeq Accession: NM_001017922

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK125447.1
exon count: 11CDS single in 3' UTR: no RNA size: 3190
ORF size: 0CDS single in intron: no Alignment % ID: 99.81
txCdsPredict score: 106.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.