Human Gene NSUN4 (uc001cpt.2)
  Description: Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr1:46,807,508-46,830,824 Size: 23,317 Total Exon Count: 6 Strand: +


Page IndexSequence and LinksPrimersGenetic AssociationsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:46,807,508-46,830,824)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerH-INVHGNCLynx
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): NSUN4
CDC HuGE Published Literature: NSUN4

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.80 RPKM in Testis
Total median expression: 157.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK021577 - Homo sapiens cDNA FLJ11515 fis, clone HEMBA1002241, weakly similar to PROLIFERATING-CELL NUCLEOLAR ANTIGEN P120.
BC014441 - Homo sapiens NOL1/NOP2/Sun domain family, member 4, mRNA (cDNA clone MGC:22960 IMAGE:4865283), complete cds.
BX648592 - Homo sapiens mRNA; cDNA DKFZp686F22205 (from clone DKFZp686F22205).
AK291741 - Homo sapiens cDNA FLJ77328 complete cds, highly similar to Homo sapiens NOL1/NOP2/Sun domain family, member 4 (NSUN4), mRNA.
AK311009 - Homo sapiens cDNA, FLJ18051.
AK295003 - Homo sapiens cDNA FLJ60253 complete cds, highly similar to Homo sapiens NOL1/NOP2/Sun domain family, member 4 (NSUN4), mRNA.
CU676995 - Synthetic construct Homo sapiens gateway clone IMAGE:100017631 5' read NSUN4 mRNA.
AB528648 - Synthetic construct DNA, clone: pF1KB6510, Homo sapiens NSUN4 gene for NOL1/NOP2/Sun domain family, member 4, without stop codon, in Flexi system.
KJ900689 - Synthetic construct Homo sapiens clone ccsbBroadEn_10083 NSUN4 gene, encodes complete protein.
AK057420 - Homo sapiens cDNA FLJ32858 fis, clone TESTI2003551, highly similar to Homo sapiens NOL1/NOP2/Sun domain family, member 4 (NSUN4), mRNA.
AK292353 - Homo sapiens cDNA FLJ77850 complete cds.
AK128066 - Homo sapiens cDNA FLJ46186 fis, clone TESTI4005013.
AK097524 - Homo sapiens cDNA FLJ40205 fis, clone TESTI2020840, highly similar to Homo sapiens NOL1/NOP2/Sun domain family, member 4 (NSUN4), mRNA.
JD019203 - Sequence 227 from Patent EP1572962.
JD028565 - Sequence 9589 from Patent EP1572962.
DQ573389 - Homo sapiens piRNA piR-41501, complete sequence.
JD035941 - Sequence 16965 from Patent EP1572962.
BC016907 - Homo sapiens NOL1/NOP2/Sun domain family, member 4, mRNA (cDNA clone IMAGE:4396276), partial cds.
AL713746 - Homo sapiens mRNA; cDNA DKFZp761L0723 (from clone DKFZp761L0723).
JD471839 - Sequence 452863 from Patent EP1572962.
JD381178 - Sequence 362202 from Patent EP1572962.
JD537255 - Sequence 518279 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK128066, uc001cpt.1
UCSC ID: uc001cpt.2
RefSeq Accession: NM_001256127

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK128066.1
exon count: 6CDS single in 3' UTR: no RNA size: 3867
ORF size: 0CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 3185.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.