Human Gene IL23R (uc001ddq.3)
  Description: Homo sapiens interleukin 23 receptor (IL23R), mRNA.
RefSeq Summary (NM_144701): The protein encoded by this gene is a subunit of the receptor for IL23A/IL23. This protein pairs with the receptor molecule IL12RB1/IL12Rbeta1, and both are required for IL23A signaling. This protein associates constitutively with Janus kinase 2 (JAK2), and also binds to transcription activator STAT3 in a ligand-dependent manner. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr1:67,635,025-67,725,650 Size: 90,626 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr1:67,672,703-67,724,811 Size: 52,109 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:67,635,025-67,725,650)mRNA (may differ from genome)Protein (375 aa)
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H-INVHGNCHPRDLynxMalacardsMGI
neXtProtPubMedReactomeTreefamUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: IL23R_HUMAN
DESCRIPTION: RecName: Full=Interleukin-23 receptor; Short=IL-23 receptor; Short=IL-23R; Flags: Precursor;
FUNCTION: Associates with IL12RB1 to form the interleukin-23 receptor. Binds IL23 and mediates T-cells, NK cells and possibly certain macrophage/myeloid cells stimulation probably through activation of the Jak-Stat signaling cascade. IL23 functions in innate and adaptive immunity and may participate in acute response to infection in peripheral tissues. IL23 may be responsible for autoimmune inflammatory diseases and be important for tumorigenesis.
SUBUNIT: Heterodimer with IL12RB1. In presence of IL23, the heterodimer forms the IL23 receptor. Interacts with JAK2 and in presence of IL23 with STAT3.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Expressed by monocytes, Th1, Th0, NK and dendritic cells. Isoform 1 is specifically expressed in NK cells.
PTM: Phosphorylated in response to IL23.
DISEASE: Genetic variations in IL23R are associated with inflammatory bowel disease type 17 (IBD17) [MIM:612261]. IBD17 is a chronic, relapsing inflammation of the gastrointestinal tract with a complex etiology. It is subdivided into Crohn disease and ulcerative colitis phenotypes. Crohn disease may affect any part of the gastrointestinal tract from the mouth to the anus, but most frequently it involves the terminal ileum and colon. Bowel inflammation is transmural and discontinuous; it may contain granulomas or be associated with intestinal or perianal fistulas. In contrast, in ulcerative colitis, the inflammation is continuous and limited to rectal and colonic mucosal layers; fistulas and granulomas are not observed. Both diseases include extraintestinal inflammation of the skin, eyes, or joints.
DISEASE: Genetic variations in IL23R are a cause of susceptibility to psoriasis type 7 (PSORS7) [MIM:605606]. Psoriasis is a common, chronic inflammatory disease of the skin with multifactorial etiology. It is characterized by red, scaly plaques usually found on the scalp, elbows and knees. These lesions are caused by abnormal keratinocyte proliferation and infiltration of inflammatory cells into the dermis and epidermis.
SIMILARITY: Belongs to the type I cytokine receptor family. Type 2 subfamily.
SIMILARITY: Contains 2 fibronectin type-III domains.
SEQUENCE CAUTION: Sequence=AAH16829.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAH70408.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAI22679.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): IL23R
CDC HuGE Published Literature: IL23R
Positive Disease Associations: , Behcet Syndrome , Cardiomyopathy, Dilated , Colitis, Ulcerative , Crohn Disease , Crohn's disease , Crohn's disease inflammatory bowel disease ulcerative colitis , Crohn's disease ulcerative colitis , Crohn's, Ulcerative Colitis , inflammatory bowel disease , Inflammatory Bowel Diseases , psoriasis , Spondylitis, Ankylosing , ulcerative colitis
Related Studies:

  1. Bernd Gruhn , et al. Biology of blood and marrow transplantation 2009 15(12):1571-7, Polymorphism of interleukin-23 receptor gene but not of NOD2/CARD15 is associated with graft-versus-host disease after hematopoietic stem cell transplantation in children., Biology of blood and marrow transplantation 2009 15(12):1571-7. [PubMed 19896081]
  2. Behcet Syndrome
    Elaine F Remmers et al. Nature genetics 2010, , Nature genetics. [PubMed 20622878]
  3. Behcet Syndrome
    Elaine F Remmers et al. Nature genetics 2010, , Nature genetics. [PubMed 20622878]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: IL23R
Diseases sorted by gene-association score: inflammatory bowel disease 17, protection against* (550), psoriasis, protection against* (550), inflammatory bowel disease (33), ulcerative colitis (31), crohn's disease (19), colitis (13), idiopathic achalasia (12), behcet syndrome* (9), inflammatory bowel disease 5 (7), spondylitis (6), chronic mucocutaneous candidiasis (5), psoriasis (4), psoriatic arthritis (3), intestinal disease (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.66 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 2.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -122.19531-0.230 Picture PostScript Text
3' UTR -241.50839-0.288 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR013783 - Ig-like_fold

SCOP Domains:
49265 - Fibronectin type III

ModBase Predicted Comparative 3D Structure on Q5VWK5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005143 interleukin-12 receptor binding
GO:0042019 interleukin-23 binding
GO:0042020 interleukin-23 receptor activity

Biological Process:
GO:0001916 positive regulation of T cell mediated cytotoxicity
GO:0002230 positive regulation of defense response to virus by host
GO:0002376 immune system process
GO:0002827 positive regulation of T-helper 1 type immune response
GO:0006954 inflammatory response
GO:0010536 positive regulation of activation of Janus kinase activity
GO:0019221 cytokine-mediated signaling pathway
GO:0032496 response to lipopolysaccharide
GO:0032693 negative regulation of interleukin-10 production
GO:0032725 positive regulation of granulocyte macrophage colony-stimulating factor production
GO:0032729 positive regulation of interferon-gamma production
GO:0032735 positive regulation of interleukin-12 production
GO:0032740 positive regulation of interleukin-17 production
GO:0032819 positive regulation of natural killer cell proliferation
GO:0034341 response to interferon-gamma
GO:0038155 interleukin-23-mediated signaling pathway
GO:0042102 positive regulation of T cell proliferation
GO:0042104 positive regulation of activated T cell proliferation
GO:0042509 regulation of tyrosine phosphorylation of STAT protein
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0043382 positive regulation of memory T cell differentiation
GO:0045087 innate immune response
GO:0045672 positive regulation of osteoclast differentiation
GO:0050829 defense response to Gram-negative bacterium
GO:0051135 positive regulation of NK T cell activation
GO:2000318 positive regulation of T-helper 17 type immune response
GO:2000330 positive regulation of T-helper 17 cell lineage commitment

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043235 receptor complex
GO:0072536 interleukin-23 receptor complex


-  Descriptions from all associated GenBank mRNAs
  BC142955 - Homo sapiens cDNA clone IMAGE:8860351, containing frame-shift errors.
AF461422 - Homo sapiens interleukin-23 receptor (IL-23R) mRNA, complete cds.
AB590605 - Synthetic construct DNA, clone: pFN21AE2035, Homo sapiens IL23R gene for interleukin 23 receptor, without stop codon, in Flexi system.
KJ905010 - Synthetic construct Homo sapiens clone ccsbBroadEn_14404 IL23R-like gene, encodes complete protein.
BC166698 - Synthetic construct Homo sapiens clone IMAGE:100066424, MGC:195561 interleukin 23 receptor (IL23R) mRNA, encodes complete protein.
AM990313 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AY937250 - Homo sapiens interleukin 23 receptor isoform 1 mRNA, partial cds, alternatively spliced.
AY937251 - Homo sapiens interleukin 23 receptor isoform 2 F1 mRNA, partial cds, alternatively spliced.
AY937252 - Homo sapiens interleukin 23 receptor isoform 2 F2 mRNA, partial cds, alternatively spliced.
AY937253 - Homo sapiens interleukin 23 receptor isoform 3 F1 mRNA, partial cds, alternatively spliced.
AY937254 - Homo sapiens interleukin 23 receptor isoform 3 F3 mRNA, partial cds, alternatively spliced.
AY937255 - Homo sapiens interleukin 23 receptor isoform 4 mRNA, partial cds, alternatively spliced.
FM212237 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), variant IL23R D7-9.
FM212238 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), variant IL23R D5,8-9.
FM212239 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), variant IL23R D8-10.
FM212240 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), variant IL23R D5-6,8-10.
FM212241 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), variant IL23R ins9b.
AM990314 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990315 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990316 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990317 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990318 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990319 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990320 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990321 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990322 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990323 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990324 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990325 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990326 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990327 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene).
AM990328 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990329 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990330 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990331 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990332 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990333 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990334 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990335 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990336 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
AM990337 - Homo sapiens partial mRNA for interleukin 23 receptor (IL23R gene), alternatively spliced.
BC016829 - Homo sapiens interleukin 23 receptor, mRNA (cDNA clone IMAGE:4132295), partial cds.
BC040720 - Homo sapiens interleukin 23 receptor, mRNA (cDNA clone IMAGE:6061504), complete cds.
KJ903859 - Synthetic construct Homo sapiens clone ccsbBroadEn_13253 IL23R gene, encodes complete protein.
JD302434 - Sequence 283458 from Patent EP1572962.
JD563027 - Sequence 544051 from Patent EP1572962.
JD378455 - Sequence 359479 from Patent EP1572962.
JD354839 - Sequence 335863 from Patent EP1572962.
JD148409 - Sequence 129433 from Patent EP1572962.
JD250039 - Sequence 231063 from Patent EP1572962.
JD238263 - Sequence 219287 from Patent EP1572962.
JD294880 - Sequence 275904 from Patent EP1572962.
JD241975 - Sequence 222999 from Patent EP1572962.
JD479528 - Sequence 460552 from Patent EP1572962.
JD421840 - Sequence 402864 from Patent EP1572962.
JD291763 - Sequence 272787 from Patent EP1572962.
JD340915 - Sequence 321939 from Patent EP1572962.
JD206431 - Sequence 187455 from Patent EP1572962.
JD289093 - Sequence 270117 from Patent EP1572962.
JD522620 - Sequence 503644 from Patent EP1572962.
JD159085 - Sequence 140109 from Patent EP1572962.
JD208994 - Sequence 190018 from Patent EP1572962.
JD548169 - Sequence 529193 from Patent EP1572962.
JD258509 - Sequence 239533 from Patent EP1572962.
JD285174 - Sequence 266198 from Patent EP1572962.
JD119730 - Sequence 100754 from Patent EP1572962.
JD430088 - Sequence 411112 from Patent EP1572962.
JD529040 - Sequence 510064 from Patent EP1572962.
JD169012 - Sequence 150036 from Patent EP1572962.
JD169013 - Sequence 150037 from Patent EP1572962.
JD040932 - Sequence 21956 from Patent EP1572962.
JD319804 - Sequence 300828 from Patent EP1572962.
JD118030 - Sequence 99054 from Patent EP1572962.
JD118031 - Sequence 99055 from Patent EP1572962.
JD074703 - Sequence 55727 from Patent EP1572962.
JD178983 - Sequence 160007 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04060 - Cytokine-cytokine receptor interaction
hsa04630 - Jak-STAT signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein Q5VWK5 (Reactome details) participates in the following event(s):

R-HSA-8950737 IL23R binds JAK2
R-HSA-8950364 IL23R in IL23:IL23 receptor complex is phosphorylated
R-HSA-9020933 Interleukin-23 signaling
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-447115 Interleukin-12 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: AY937252, C9JGX4, IL23R_HUMAN, Q4VGP1, Q4VGP2, Q4VGP3, Q4VGP4, Q4VGP5, Q4VGP6, Q5VWK5, Q5VWK7, Q8IW84, Q8NFQ9, Q96AS1
UCSC ID: uc001ddq.3
RefSeq Accession: NM_144701
Protein: Q5VWK5 (aka IL23R_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AY937252.1
exon count: 8CDS single in 3' UTR: no RNA size: 1618
ORF size: 1128CDS single in intron: no Alignment % ID: 99.69
txCdsPredict score: 2048.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.