Human Gene GSTM3 (uc001dyo.2)
  Description: Homo sapiens glutathione S-transferase mu 3 (brain) (GSTM3), transcript variant 1, mRNA.
RefSeq Summary (NM_000849): Cytosolic and membrane-bound forms of glutathione S-transferase are encoded by two distinct supergene families. At present, eight distinct classes of the soluble cytoplasmic mammalian glutathione S-transferases have been identified: alpha, kappa, mu, omega, pi, sigma, theta and zeta. This gene encodes a glutathione S-transferase that belongs to the mu class. The mu class of enzymes functions in the detoxification of electrophilic compounds, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress, by conjugation with glutathione. The genes encoding the mu class of enzymes are organized in a gene cluster on chromosome 1p13.3 and are known to be highly polymorphic. These genetic variations can change an individual's susceptibility to carcinogens and toxins as well as affect the toxicity and efficacy of certain drugs. Mutations of this class mu gene have been linked with a slight increase in a number of cancers, likely due to exposure with environmental toxins. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2008].
Transcript (Including UTRs)
   Position: hg19 chr1:110,276,554-110,283,660 Size: 7,107 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr1:110,279,693-110,282,909 Size: 3,217 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:110,276,554-110,283,660)mRNA (may differ from genome)Protein (225 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GSTM3_HUMAN
DESCRIPTION: RecName: Full=Glutathione S-transferase Mu 3; EC=2.5.1.18; AltName: Full=GST class-mu 3; AltName: Full=GSTM3-3; Short=hGSTM3-3;
FUNCTION: Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. May govern uptake and detoxification of both endogenous compounds and xenobiotics at the testis and brain blood barriers.
CATALYTIC ACTIVITY: RX + glutathione = HX + R-S-glutathione.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=1.1 mM for 1-chloro-2,4-dinitrobenzene; KM=0.084 mM for glutathione;
SUBUNIT: Homodimer.
INTERACTION: Self; NbExp=3; IntAct=EBI-350350, EBI-350350;
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Testis and brain.
PTM: The N-terminus is blocked.
SIMILARITY: Belongs to the GST superfamily. Mu family.
SIMILARITY: Contains 1 GST C-terminal domain.
SIMILARITY: Contains 1 GST N-terminal domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): GSTM3
CDC HuGE Published Literature: GSTM3
Positive Disease Associations: asthma , breast cancer , colorectal cancer , cystic fibrosis , lung cancer , prostate cancer
Related Studies:
  1. asthma
    Wikman, H. et al. 2002, N-Acetyltransferase genotypes as modifiers of diisocyanate exposure-associated asthma risk., Pharmacogenetics. 2002 Apr;12(3):227-33. [PubMed 11927838]
    The results suggest for the first time that in addition to GSTs, the NATs play an important role in inception of asthmatic reactions related to occupational exposure to diisocyanates.
  2. breast cancer
    Mitrunen, K. et al. 2001, Glutathione S-transferase M1, M3, P1, and T1 genetic polymorphisms and susceptibility to breast cancer., Cancer epidemiology, biomarkers & prevention. 2001 Mar;10(3):229-36. [PubMed 11303592]
    Our findings support the view that GST genotypes contribute to the individual breast cancer risk, especially in certain combinations.
  3. colorectal cancer
    Loktionov, A. et al. 2001, Glutathione-S-transferase gene polymorphisms in colorectal cancer patients: interaction betweenGSTM1 and GSTM3 allele variants as a risk-modulating factor., Carcinogenesis. 2001 Jul;22(7):1053-60. [PubMed 11408349]
    Our findings suggest that interactions of polymorphic genotypes within the GSTM gene cluster affect individual susceptibility to colorectal carcinogenesis, the GSTM3*B variant presence being a risk factor especially in combination with the GSTM1-null genotype.
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: GSTM3
Diseases sorted by gene-association score: pharynx cancer (21), larynx cancer (16), oral cancer (7), basal cell carcinoma (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 137.25 RPKM in Testis
Total median expression: 801.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -134.70310-0.435 Picture PostScript Text
3' UTR -945.783139-0.301 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010987 - Glutathione-S-Trfase_C-like
IPR004045 - Glutathione_S-Trfase_N
IPR017933 - Glutathione_S_Trfase/Cl_chnl_C
IPR004046 - GST_C
IPR003081 - GST_mu
IPR012336 - Thioredoxin-like_fold

Pfam Domains:
PF00043 - Glutathione S-transferase, C-terminal domain
PF02798 - Glutathione S-transferase, N-terminal domain
PF14497 - Glutathione S-transferase, C-terminal domain

SCOP Domains:
47616 - Glutathione S-transferase (GST), C-terminal domain
52833 - Thioredoxin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3GTU - X-ray


ModBase Predicted Comparative 3D Structure on P21266
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004364 glutathione transferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0019899 enzyme binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0043295 glutathione binding

Biological Process:
GO:0006749 glutathione metabolic process
GO:0008065 establishment of blood-nerve barrier
GO:0008152 metabolic process
GO:0018916 nitrobenzene metabolic process
GO:0042178 xenobiotic catabolic process
GO:0043627 response to estrogen
GO:0070458 cellular detoxification of nitrogen compound
GO:1901687 glutathione derivative biosynthetic process

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0035686 sperm fibrous sheath
GO:0045171 intercellular bridge
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC030253 - Homo sapiens glutathione S-transferase M3 (brain), mRNA (cDNA clone IMAGE:5112380).
LF385407 - JP 2014500723-A/192910: Polycomb-Associated Non-Coding RNAs.
AK131000 - Homo sapiens cDNA FLJ27490 fis, clone STM01825.
KJ905766 - Synthetic construct Homo sapiens clone ccsbBroadEn_15436 GSTM3 gene, encodes complete protein.
JD447886 - Sequence 428910 from Patent EP1572962.
JD179519 - Sequence 160543 from Patent EP1572962.
JD291617 - Sequence 272641 from Patent EP1572962.
JD431228 - Sequence 412252 from Patent EP1572962.
JD388486 - Sequence 369510 from Patent EP1572962.
JD208612 - Sequence 189636 from Patent EP1572962.
JD377666 - Sequence 358690 from Patent EP1572962.
JD158760 - Sequence 139784 from Patent EP1572962.
AK304300 - Homo sapiens cDNA FLJ51755 complete cds, highly similar to Glutathione S-transferase Mu 3 (EC 2.5.1.18).
BC000088 - Homo sapiens glutathione S-transferase mu 3 (brain), mRNA (cDNA clone MGC:3310 IMAGE:3509784), complete cds.
GQ891462 - Homo sapiens clone HEL-S-183 epididymis secretory sperm binding protein mRNA, complete cds.
J05459 - Human glutathione transferase M3 (GSTM3) mRNA, complete cds.
AB209816 - Homo sapiens mRNA for glutathione S-transferase M3 variant protein.
JD486672 - Sequence 467696 from Patent EP1572962.
JD185765 - Sequence 166789 from Patent EP1572962.
LF206297 - JP 2014500723-A/13800: Polycomb-Associated Non-Coding RNAs.
BC008790 - Homo sapiens glutathione S-transferase mu 3 (brain), mRNA (cDNA clone MGC:3704 IMAGE:3630923), complete cds.
JD373243 - Sequence 354267 from Patent EP1572962.
JD275164 - Sequence 256188 from Patent EP1572962.
JD272782 - Sequence 253806 from Patent EP1572962.
CR542108 - Homo sapiens full open reading frame cDNA clone RZPDo834G0637D for gene GSTM3, glutathione S-transferase M3 (brain); complete cds, incl. stopcodon.
KJ891309 - Synthetic construct Homo sapiens clone ccsbBroadEn_00703 GSTM3 gene, encodes complete protein.
KJ896939 - Synthetic construct Homo sapiens clone ccsbBroadEn_06333 GSTM3 gene, encodes complete protein.
AK313444 - Homo sapiens cDNA, FLJ93985, Homo sapiens glutathione S-transferase M3 (brain) (GSTM3), mRNA.
BT019945 - Homo sapiens glutathione S-transferase M3 (brain) mRNA, complete cds.
DQ891834 - Synthetic construct clone IMAGE:100004464; FLH180413.01X; RZPDo839B12134D glutathione S-transferase M3 (brain) (GSTM3) gene, encodes complete protein.
EU176637 - Synthetic construct Homo sapiens clone IMAGE:100011437; FLH180412.01L; RZPDo839A09254D glutathione S-transferase M3 (brain) (GSTM3) gene, encodes complete protein.
AB527634 - Synthetic construct DNA, clone: pF1KB5375, Homo sapiens GSTM3 gene for glutathione S-transferase mu 3, without stop codon, in Flexi system.
EF363096 - Homo sapiens clone 3B12-s044 brain type mu-glutathione S-transferase (GSTM3) mRNA, GSTM3-63C allele, complete cds.
LF211920 - JP 2014500723-A/19423: Polycomb-Associated Non-Coding RNAs.
LF353052 - JP 2014500723-A/160555: Polycomb-Associated Non-Coding RNAs.
LF353051 - JP 2014500723-A/160554: Polycomb-Associated Non-Coding RNAs.
JD192126 - Sequence 173150 from Patent EP1572962.
JD423874 - Sequence 404898 from Patent EP1572962.
JD200739 - Sequence 181763 from Patent EP1572962.
MA620984 - JP 2018138019-A/192910: Polycomb-Associated Non-Coding RNAs.
MA588629 - JP 2018138019-A/160555: Polycomb-Associated Non-Coding RNAs.
MA588628 - JP 2018138019-A/160554: Polycomb-Associated Non-Coding RNAs.
MA441874 - JP 2018138019-A/13800: Polycomb-Associated Non-Coding RNAs.
MA447497 - JP 2018138019-A/19423: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00480 - Glutathione metabolism
hsa00980 - Metabolism of xenobiotics by cytochrome P450
hsa00982 - Drug metabolism - cytochrome P450

BioCyc Knowledge Library
PWY-4061 - glutathione-mediated detoxification

Reactome (by CSHL, EBI, and GO)

Protein P21266 (Reactome details) participates in the following event(s):

R-HSA-176054 GST dimers conjugate GSH with cytosolic substrates
R-HSA-156590 Glutathione conjugation
R-HSA-156580 Phase II - Conjugation of compounds
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: GST5, GSTM3_HUMAN, NM_000849, NP_000840, O60550, P21266, Q96HA3
UCSC ID: uc001dyo.2
RefSeq Accession: NM_000849
Protein: P21266 (aka GSTM3_HUMAN or GTM3_HUMAN)
CCDS: CCDS812.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_000849.4
exon count: 9CDS single in 3' UTR: no RNA size: 4144
ORF size: 678CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1456.50frame shift in genome: no % Coverage: 99.59
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.