Human Gene CSDE1 (uc001efj.3)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Genetic Association Studies of Complex Diseases and Disorders
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Genetic Association Database (archive): CSDE1
CDC HuGE Published Literature: CSDE1
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Comparative Toxicogenomics Database (CTD)
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AM392858 - Synthetic construct Homo sapiens clone IMAGE:100002734 for hypothetical protein (CSDE1 gene). X02751 - Human N-ras mRNA and flanking regions. CR749378 - Homo sapiens mRNA; cDNA DKFZp779J1455 (from clone DKFZp779J1455). CR749431 - Homo sapiens mRNA; cDNA DKFZp779B0247 (from clone DKFZp779B0247). BX648780 - Homo sapiens mRNA; cDNA DKFZp686O07132 (from clone DKFZp686O07132). AB020692 - Homo sapiens KIAA0885 mRNA for KIAA0885 protein. JD051269 - Sequence 32293 from Patent EP1572962. JD484298 - Sequence 465322 from Patent EP1572962. JD302616 - Sequence 283640 from Patent EP1572962. AL050150 - Homo sapiens mRNA; cDNA DKFZp586J0620 (from clone DKFZp586J0620); partial cds. AK130392 - Homo sapiens cDNA FLJ26882 fis, clone PRS09202, highly similar to UNR protein. AK022516 - Homo sapiens cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to UNR PROTEIN. AK022528 - Homo sapiens cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to UNR PROTEIN. AL110192 - Homo sapiens mRNA; cDNA DKFZp566C233 (from clone DKFZp566C233); partial cds. BX648561 - Homo sapiens mRNA; cDNA DKFZp779L1054 (from clone DKFZp779L1054). BC021692 - Homo sapiens cold shock domain containing E1, RNA-binding, mRNA (cDNA clone IMAGE:3961444), partial cds. AF077054 - Homo sapiens unr protein mRNA, complete cds. JD273381 - Sequence 254405 from Patent EP1572962. JD171859 - Sequence 152883 from Patent EP1572962. BC017662 - Homo sapiens cDNA clone IMAGE:3912700, containing frame-shift errors. JD292896 - Sequence 273920 from Patent EP1572962. JD262562 - Sequence 243586 from Patent EP1572962. AY049788 - Homo sapiens NRAS-related protein (UNR) mRNA, complete cds. AK290146 - Homo sapiens cDNA FLJ78375 complete cds, highly similar to Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 1, mRNA. BC032446 - Homo sapiens cold shock domain containing E1, RNA-binding, mRNA (cDNA clone MGC:40318 IMAGE:5111213), complete cds. JD491675 - Sequence 472699 from Patent EP1572962. AM393166 - Synthetic construct Homo sapiens clone IMAGE:100003053 for hypothetical protein (CSDE1 gene). AM393479 - Synthetic construct Homo sapiens clone IMAGE:100002983 for hypothetical protein (CSDE1 gene). AM393616 - Synthetic construct Homo sapiens clone IMAGE:100003054 for hypothetical protein (CSDE1 gene). AM393624 - Synthetic construct Homo sapiens clone IMAGE:100003012 for hypothetical protein (CSDE1 gene). AB384032 - Synthetic construct DNA, clone: pF1KSDA0885, Homo sapiens CSDE1 gene for cold shock domain-containing protein E1, complete cds, without stop codon, in Flexi system. AF070542 - Homo sapiens clone 24514 unknown mRNA. DQ575323 - Homo sapiens piRNA piR-43435, complete sequence. DQ586108 - Homo sapiens piRNA piR-53220, complete sequence. AK131495 - Homo sapiens cDNA FLJ16692 fis, clone TRACH3002561. JD332705 - Sequence 313729 from Patent EP1572962. JD304097 - Sequence 285121 from Patent EP1572962. DQ591464 - Homo sapiens piRNA piR-58576, complete sequence. JD501480 - Sequence 482504 from Patent EP1572962. JD467922 - Sequence 448946 from Patent EP1572962. JD175141 - Sequence 156165 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: AY049788 UCSC ID: uc001efj.3 RefSeq Accession: NM_007158
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Gene Model Information
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category:
| nearCoding
| nonsense-mediated-decay:
| yes
| RNA accession:
| AY049788.1
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exon count:
| 18 | CDS single in 3' UTR:
| no
| RNA size:
| 2537 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.96 |
txCdsPredict score:
| 4037.50 | frame shift in genome:
| no
| % Coverage:
| 99.88 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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