Human Gene RGS8 (uc001gpm.1)
  Description: Homo sapiens regulator of G-protein signaling 8 (RGS8), transcript variant 1, mRNA.
RefSeq Summary (NM_033345): This gene is a member of the regulator of G protein signaling (RGS) family and encodes a protein with a single RGS domain. Regulator of G protein signaling (RGS) proteins are regulatory and structural components of G protein-coupled receptor complexes. They accelerate transit through the cycle of GTP binding and hydrolysis to GDP, thereby terminating signal transduction, but paradoxically, also accelerate receptor-stimulated activation. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr1:182,615,792-182,642,067 Size: 26,276 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr1:182,615,870-182,641,959 Size: 26,090 Coding Exon Count: 6 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:182,615,792-182,642,067)mRNA (may differ from genome)Protein (198 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkHGNCHPRDLynxMGIOMIM
PubMedReactomeTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): RGS8
CDC HuGE Published Literature: RGS8
Positive Disease Associations: Body Mass Index , Body Weight , Bone Density , Brain , Cardiovascular Diseases
Related Studies:
  1. Body Mass Index
    Caroline S Fox et al. BMC medical genetics 2007, Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project., BMC medical genetics. [PubMed 17903300]
    Adiposity traits are associated with SNPs on the Affymetrix 100K SNP GeneChip. Replication of these initial findings is necessary. These data will serve as a resource for replication as more genes become identified with BMI and WC.
  2. Body Weight
    Caroline S Fox et al. BMC medical genetics 2007, Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project., BMC medical genetics. [PubMed 17903300]
    Adiposity traits are associated with SNPs on the Affymetrix 100K SNP GeneChip. Replication of these initial findings is necessary. These data will serve as a resource for replication as more genes become identified with BMI and WC.
  3. Bone Density
    Douglas P Kiel et al. BMC medical genetics 2007, Genome-wide association with bone mass and geometry in the Framingham Heart Study., BMC medical genetics. [PubMed 17903296]
    The FHS 100K SNP project offers an unbiased genome-wide strategy to identify new candidate loci and to replicate previously suggested candidate genes for osteoporosis.
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.57 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 10.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -34.30108-0.318 Picture PostScript Text
3' UTR -16.5078-0.212 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00615 - Regulator of G protein signaling domain

SCOP Domains:
48097 - Regulator of G-protein signaling, RGS

ModBase Predicted Comparative 3D Structure on P57771-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Descriptions from all associated GenBank mRNAs
  AH010175 - Homo sapiens chromosome 1 RGS8 mRNA, complete cds.
AK294660 - Homo sapiens cDNA FLJ50143 complete cds, highly similar to Regulator of G-protein signaling 8.
AK296514 - Homo sapiens cDNA FLJ52186 complete cds, highly similar to Regulator of G-protein signaling 8.
JD297658 - Sequence 278682 from Patent EP1572962.
BC069677 - Homo sapiens regulator of G-protein signaling 8, mRNA (cDNA clone MGC:97330 IMAGE:7262579), complete cds.
BC069718 - Homo sapiens regulator of G-protein signaling 8, mRNA (cDNA clone MGC:97339 IMAGE:7262591), complete cds.
BC103865 - Homo sapiens regulator of G-protein signaling 8, mRNA (cDNA clone MGC:119067 IMAGE:40003386), complete cds.
BC103866 - Homo sapiens regulator of G-protein signaling 8, mRNA (cDNA clone MGC:119068 IMAGE:40003387), complete cds.
BC103867 - Homo sapiens regulator of G-protein signaling 8, mRNA (cDNA clone MGC:119069 IMAGE:40003388), complete cds.
AF300649 - Homo sapiens regulator of G-protein signaling (RGS8) mRNA, complete cds.
CU686972 - Synthetic construct Homo sapiens gateway clone IMAGE:100022588 5' read RGS8 mRNA.
HQ448388 - Synthetic construct Homo sapiens clone IMAGE:100071815; CCSB014025_01 regulator of G-protein signalling 8 (RGS8) gene, encodes complete protein.
CU686986 - Synthetic construct Homo sapiens gateway clone IMAGE:100022609 5' read RGS8 mRNA.
KJ899865 - Synthetic construct Homo sapiens clone ccsbBroadEn_09259 RGS8 gene, encodes complete protein.
KJ906381 - Synthetic construct Homo sapiens clone ccsbBroadEn_16051 RGS8 gene, encodes complete protein.
AB529102 - Synthetic construct DNA, clone: pF1KB4501, Homo sapiens RGS8 gene for regulator of G-protein signaling 8, without stop codon, in Flexi system.
LF205398 - JP 2014500723-A/12901: Polycomb-Associated Non-Coding RNAs.
LF320118 - JP 2014500723-A/127621: Polycomb-Associated Non-Coding RNAs.
JD187809 - Sequence 168833 from Patent EP1572962.
MA440975 - JP 2018138019-A/12901: Polycomb-Associated Non-Coding RNAs.
MA555695 - JP 2018138019-A/127621: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_033345, NP_203131, P57771-2
UCSC ID: uc001gpm.1
RefSeq Accession: NM_033345
Protein: P57771-2, splice isoform of P57771 CCDS: CCDS1349.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_033345.2
exon count: 6CDS single in 3' UTR: no RNA size: 783
ORF size: 597CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 935.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.