Human Gene BLOC1S2 (uc001kqv.2)
|
|
Sequence and Links to Tools and Databases
|
|
Primer design for this transcript
|
|
MalaCards Disease Associations
|
|
Comparative Toxicogenomics Database (CTD)
|
|
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
|
|
Microarray Expression Data
|
|
Press "+" in the title bar above to open this section.
| |
|
|
Orthologous Genes in Other Species
|
|
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
| | | | | |
| | | | | |
| | | | | |
| | | | | |
| | | | | |
|
| |
|
|
Descriptions from all associated GenBank mRNAs
|
|
JD546448 - Sequence 527472 from Patent EP1572962. AK054697 - Homo sapiens cDNA FLJ30135 fis, clone BRACE2000061. BC020494 - Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 2, mRNA (cDNA clone MGC:10120 IMAGE:3900723), complete cds. AB593084 - Homo sapiens BLOC1S2 mRNA for biogenesis of lysosome-related organelles complex 1 subunit 2, complete cds, clone: HP05843-RBb25C08. JD244241 - Sequence 225265 from Patent EP1572962. AK298969 - Homo sapiens cDNA FLJ54853 complete cds, highly similar to Biogenesis of lysosome-related organellescomplex-1 subunit 2. JD314438 - Sequence 295462 from Patent EP1572962. JD524386 - Sequence 505410 from Patent EP1572962. JD430694 - Sequence 411718 from Patent EP1572962. JD147244 - Sequence 128268 from Patent EP1572962. AY278457 - Homo sapiens 11 kDa centrosome associated protein (CEAP11) mRNA, complete cds, alternatively spliced. JD062479 - Sequence 43503 from Patent EP1572962. AY531265 - Homo sapiens biogenesis of lysosome-related organelles complex 1 subunit 2 mRNA, complete cds. KJ900539 - Synthetic construct Homo sapiens clone ccsbBroadEn_09933 BLOC1S2 gene, encodes complete protein. AB463442 - Synthetic construct DNA, clone: pF1KB8225, Homo sapiens BLOC1S2 gene for biogenesis of lysosome-related organelles complex-1, subunit 2, without stop codon, in Flexi system.
| |
|
|
Other Names for This Gene
|
|
Alternate Gene Symbols: NR_046296, uc001kqv.1 UCSC ID: uc001kqv.2 RefSeq Accession: NR_046296
| |
|
|
Gene Model Information
|
|
category:
| nearCoding
| nonsense-mediated-decay:
| no
| RNA accession:
| NR_046296.2
|
exon count:
| 4 | CDS single in 3' UTR:
| no
| RNA size:
| 2717 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 600.00 | frame shift in genome:
| no
| % Coverage:
| 99.52 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 27 | # strange splices:
| 0 |
|
Click here
for a detailed description of the fields of the table above.
| |
|
|
Methods, Credits, and Use Restrictions
|
|
Click here
for details on how this gene model was made and data restrictions if any.
| |
|
|
|