Human Gene BLOC1S2 (uc001kqv.2)
  Description: Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 2 (BLOC1S2), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr10:102,033,035-102,046,116 Size: 13,082 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:102,033,035-102,046,116)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerH-INVHGNCLynxMalacards
PubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BLOC1S2
Diseases sorted by gene-association score: vein disease (3), taylor's syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.36 RPKM in Brain - Hypothalamus
Total median expression: 710.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JD546448 - Sequence 527472 from Patent EP1572962.
AK054697 - Homo sapiens cDNA FLJ30135 fis, clone BRACE2000061.
BC020494 - Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 2, mRNA (cDNA clone MGC:10120 IMAGE:3900723), complete cds.
AB593084 - Homo sapiens BLOC1S2 mRNA for biogenesis of lysosome-related organelles complex 1 subunit 2, complete cds, clone: HP05843-RBb25C08.
JD244241 - Sequence 225265 from Patent EP1572962.
AK298969 - Homo sapiens cDNA FLJ54853 complete cds, highly similar to Biogenesis of lysosome-related organellescomplex-1 subunit 2.
JD314438 - Sequence 295462 from Patent EP1572962.
JD524386 - Sequence 505410 from Patent EP1572962.
JD430694 - Sequence 411718 from Patent EP1572962.
JD147244 - Sequence 128268 from Patent EP1572962.
AY278457 - Homo sapiens 11 kDa centrosome associated protein (CEAP11) mRNA, complete cds, alternatively spliced.
JD062479 - Sequence 43503 from Patent EP1572962.
AY531265 - Homo sapiens biogenesis of lysosome-related organelles complex 1 subunit 2 mRNA, complete cds.
KJ900539 - Synthetic construct Homo sapiens clone ccsbBroadEn_09933 BLOC1S2 gene, encodes complete protein.
AB463442 - Synthetic construct DNA, clone: pF1KB8225, Homo sapiens BLOC1S2 gene for biogenesis of lysosome-related organelles complex-1, subunit 2, without stop codon, in Flexi system.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_046296, uc001kqv.1
UCSC ID: uc001kqv.2
RefSeq Accession: NR_046296

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_046296.2
exon count: 4CDS single in 3' UTR: no RNA size: 2717
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 600.00frame shift in genome: no % Coverage: 99.52
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 27# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.