Human Gene CALHM2 (uc001kxc.3)
Description: Homo sapiens calcium homeostasis modulator 2 (CALHM2), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr10:105,206,543-105,212,162 Size: 5,620 Total Exon Count: 4 Strand: -
Coding Region
Position: hg19 chr10:105,207,277-105,209,698 Size: 2,422 Coding Exon Count: 2
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): CALHM2
CDC HuGE Published Literature: CALHM2
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF14798 - Calcium homeostasis modulator
ModBase Predicted Comparative 3D Structure on Q9HA72-3
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK022195 - Homo sapiens cDNA FLJ12133 fis, clone MAMMA1000278.AF131810 - Homo sapiens clone 25130 mRNA sequence, complete cds.BC000039 - Homo sapiens calcium homeostasis modulator 2, mRNA (cDNA clone MGC:1824 IMAGE:3509518), complete cds.JD461127 - Sequence 442151 from Patent EP1572962.JD104061 - Sequence 85085 from Patent EP1572962.JD216408 - Sequence 197432 from Patent EP1572962.JD496473 - Sequence 477497 from Patent EP1572962.JD470291 - Sequence 451315 from Patent EP1572962.JD455566 - Sequence 436590 from Patent EP1572962.JD150201 - Sequence 131225 from Patent EP1572962.JD176184 - Sequence 157208 from Patent EP1572962.KJ898813 - Synthetic construct Homo sapiens clone ccsbBroadEn_08207 CALHM2 gene, encodes complete protein.AK125276 - Homo sapiens cDNA FLJ43286 fis, clone MESAN2001979.JD461674 - Sequence 442698 from Patent EP1572962.JD094990 - Sequence 76014 from Patent EP1572962.JD175323 - Sequence 156347 from Patent EP1572962.JD425124 - Sequence 406148 from Patent EP1572962.JD211466 - Sequence 192490 from Patent EP1572962.JD355514 - Sequence 336538 from Patent EP1572962.JD140800 - Sequence 121824 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: FAM26B, NR_024552, Q9HA72-3UCSC ID: uc001kxc.3RefSeq Accession: NR_024552
Protein: Q9HA72-3 , splice isoform of Q9HA72
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NR_024552.1
exon count:
4 CDS single in 3' UTR:
no
RNA size:
1850
ORF size:
591 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1166.00 frame shift in genome:
no
% Coverage:
99.08
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.