Human Gene IGSF22 (uc001mpa.2)
  Description: Homo sapiens immunoglobulin superfamily, member 22 (IGSF22), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr11:18,725,852-18,747,777 Size: 21,926 Total Exon Count: 21 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:18,725,852-18,747,777)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVHGNCLynx
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.26 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 20.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK095113 - Homo sapiens cDNA FLJ37794 fis, clone BRHIP3000488.
BC115396 - Homo sapiens cDNA clone IMAGE:40068570.
BC115397 - Homo sapiens immunoglobulin superfamily, member 22, mRNA (cDNA clone MGC:134854 IMAGE:40068579), complete cds.
JD279442 - Sequence 260466 from Patent EP1572962.
JD436879 - Sequence 417903 from Patent EP1572962.
JD565223 - Sequence 546247 from Patent EP1572962.
JD276136 - Sequence 257160 from Patent EP1572962.
JD563885 - Sequence 544909 from Patent EP1572962.
JD188776 - Sequence 169800 from Patent EP1572962.
JD334211 - Sequence 315235 from Patent EP1572962.
JD517061 - Sequence 498085 from Patent EP1572962.
JD144218 - Sequence 125242 from Patent EP1572962.
JD361553 - Sequence 342577 from Patent EP1572962.
JD257322 - Sequence 238346 from Patent EP1572962.
JD333471 - Sequence 314495 from Patent EP1572962.
JD203276 - Sequence 184300 from Patent EP1572962.
JD265307 - Sequence 246331 from Patent EP1572962.
JD079694 - Sequence 60718 from Patent EP1572962.
JD564667 - Sequence 545691 from Patent EP1572962.
JD067796 - Sequence 48820 from Patent EP1572962.
JD303774 - Sequence 284798 from Patent EP1572962.
JD379475 - Sequence 360499 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK095113
UCSC ID: uc001mpa.2
RefSeq Accession: NM_173588

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK095113.1
exon count: 21CDS single in 3' UTR: no RNA size: 3935
ORF size: 0CDS single in intron: no Alignment % ID: 99.77
txCdsPredict score: 5152.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.