Human Gene ANKRD13D (uc001okc.2)
Description: Homo sapiens ankyrin repeat domain 13 family, member D (ANKRD13D), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr11:67,056,762-67,069,955 Size: 13,194 Total Exon Count: 16 Strand: +
Coding Region
Position: hg19 chr11:67,057,828-67,069,803 Size: 11,976 Coding Exon Count: 13
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: AN13D_HUMAN
DESCRIPTION: RecName: Full=Ankyrin repeat domain-containing protein 13D;
SIMILARITY: Contains 3 UIM (ubiquitin-interacting motif) repeats.
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): ANKRD13D
CDC HuGE Published Literature: ANKRD13D
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR021832 - ANKRD13
IPR003903 - Ubiquitin-int_motif
Pfam Domains: PF02809 - Ubiquitin interaction motif
PF11904 - GPCR-chaperone
ModBase Predicted Comparative 3D Structure on Q6ZTN6
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC110419 - Homo sapiens ankyrin repeat domain 13 family, member D, mRNA (cDNA clone MGC:117203 IMAGE:5210878), complete cds.AK124721 - Homo sapiens cDNA FLJ42731 fis, clone BRAWH2012162, moderately similar to Homo sapiens KE03 protein.AK096277 - Homo sapiens cDNA FLJ38958 fis, clone NT2RI2000133, moderately similar to Homo sapiens KE03 protein mRNA.AK126438 - Homo sapiens cDNA FLJ44474 fis, clone UTERU2031268, weakly similar to Homo sapiens NY-REN-25 antigen.BC121024 - Homo sapiens ankyrin repeat domain 13 family, member D, mRNA (cDNA clone MGC:149687 IMAGE:40117420), complete cds.BC121025 - Homo sapiens ankyrin repeat domain 13 family, member D, mRNA (cDNA clone MGC:149688 IMAGE:40117423), complete cds.JD071825 - Sequence 52849 from Patent EP1572962.KJ905080 - Synthetic construct Homo sapiens clone ccsbBroadEn_14474 ANKRD13D gene, encodes complete protein.KJ906488 - Synthetic construct Homo sapiens clone ccsbBroadEn_16158 ANKRD13D gene, encodes complete protein.AK091614 - Homo sapiens cDNA FLJ34295 fis, clone FEBRA2005701, weakly similar to ZINC FINGER PROTEIN 195.AX747096 - Sequence 621 from Patent EP1308459.AK057566 - Homo sapiens cDNA FLJ33004 fis, clone THYMU1000242, weakly similar to Human transformation-related protein mRNA.AK057681 - Homo sapiens cDNA FLJ33119 fis, clone TRACH2001395, highly similar to Ankyrin repeat domain-containing protein 13D.AK027313 - Homo sapiens cDNA FLJ14407 fis, clone HEMBA1004295, highly similar to Ankyrin repeat domain-containing protein 13D.BC044239 - Homo sapiens ankyrin repeat domain 13 family, member D, mRNA (cDNA clone IMAGE:5750538), complete cds.CU692190 - Synthetic construct Homo sapiens gateway clone IMAGE:100021297 5' read ANKRD13D mRNA.KJ906487 - Synthetic construct Homo sapiens clone ccsbBroadEn_16157 ANKRD13D gene, encodes complete protein.JD187719 - Sequence 168743 from Patent EP1572962.JD413707 - Sequence 394731 from Patent EP1572962.JD191320 - Sequence 172344 from Patent EP1572962.JD563683 - Sequence 544707 from Patent EP1572962.JD199361 - Sequence 180385 from Patent EP1572962.JD469534 - Sequence 450558 from Patent EP1572962.JD048642 - Sequence 29666 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: AN13D_HUMAN, D6RCN6, NR_030767, Q0VAK0, Q0VGC3, Q6ZTN6, Q6ZVD0, Q86SU1UCSC ID: uc001okc.2RefSeq Accession: NR_030767
Protein: Q6ZTN6
(aka AN13D_HUMAN)
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NR_030767.1
exon count:
16 CDS single in 3' UTR:
no
RNA size:
2233
ORF size:
1557 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
3120.00 frame shift in genome:
no
% Coverage:
99.55
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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