Human Gene FAM86C1 (uc001oqw.4)
Description: Homo sapiens family with sequence similarity 86, member C1 (FAM86C1), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chr11:71,498,557-71,512,280 Size: 13,724 Total Exon Count: 4 Strand: +
Coding Region
Position: hg19 chr11:71,498,583-71,510,693 Size: 12,111 Coding Exon Count: 4
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF14904 - Family of unknown function
ModBase Predicted Comparative 3D Structure on Q9NVL1-2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK311675 - Homo sapiens cDNA, FLJ18717.AK130709 - Homo sapiens cDNA FLJ27199 fis, clone SYN03042.AK311518 - Homo sapiens cDNA, FLJ18560.BC032519 - Homo sapiens family with sequence similarity 86, member C, mRNA (cDNA clone MGC:45068 IMAGE:5494088), complete cds.JF432479 - Synthetic construct Homo sapiens clone IMAGE:100073700 family with sequence similarity 86, member C (FAM86C) gene, encodes complete protein.KJ894153 - Synthetic construct Homo sapiens clone ccsbBroadEn_03547 FAM86C1 gene, encodes complete protein.AK315454 - Homo sapiens cDNA, FLJ96512.AK293221 - Homo sapiens cDNA FLJ57700 complete cds, weakly similar to Protein FAM86A.AK311428 - Homo sapiens cDNA, FLJ18470.AK001523 - Homo sapiens cDNA FLJ10661 fis, clone NT2RP2006106.JD131408 - Sequence 112432 from Patent EP1572962.JD258092 - Sequence 239116 from Patent EP1572962.JD489510 - Sequence 470534 from Patent EP1572962.JD297325 - Sequence 278349 from Patent EP1572962.JD165750 - Sequence 146774 from Patent EP1572962.JD336027 - Sequence 317051 from Patent EP1572962.JD336031 - Sequence 317055 from Patent EP1572962.JD336027 - Sequence 317051 from Patent EP1572962.JD336027 - Sequence 317051 from Patent EP1572962.JD336031 - Sequence 317055 from Patent EP1572962.JD336027 - Sequence 317051 from Patent EP1572962.JD336031 - Sequence 317055 from Patent EP1572962.JD336027 - Sequence 317051 from Patent EP1572962.JD336031 - Sequence 317055 from Patent EP1572962.JD069357 - Sequence 50381 from Patent EP1572962.JD111576 - Sequence 92600 from Patent EP1572962.JD040546 - Sequence 21570 from Patent EP1572962.JD044521 - Sequence 25545 from Patent EP1572962.JD178549 - Sequence 159573 from Patent EP1572962.JD178548 - Sequence 159572 from Patent EP1572962.JD544133 - Sequence 525157 from Patent EP1572962.JD515361 - Sequence 496385 from Patent EP1572962.JD098436 - Sequence 79460 from Patent EP1572962.JD374259 - Sequence 355283 from Patent EP1572962.JD343924 - Sequence 324948 from Patent EP1572962.JD222707 - Sequence 203731 from Patent EP1572962.JD163179 - Sequence 144203 from Patent EP1572962.JD520547 - Sequence 501571 from Patent EP1572962.JD441049 - Sequence 422073 from Patent EP1572962.JD214613 - Sequence 195637 from Patent EP1572962.JD475881 - Sequence 456905 from Patent EP1572962.JD475882 - Sequence 456906 from Patent EP1572962.JD493483 - Sequence 474507 from Patent EP1572962.JD379537 - Sequence 360561 from Patent EP1572962.JD379538 - Sequence 360562 from Patent EP1572962.JD563510 - Sequence 544534 from Patent EP1572962.JD109768 - Sequence 90792 from Patent EP1572962.JD068108 - Sequence 49132 from Patent EP1572962.JD400487 - Sequence 381511 from Patent EP1572962.JD464569 - Sequence 445593 from Patent EP1572962.DQ587039 - Homo sapiens piRNA piR-54151, complete sequence.JD136662 - Sequence 117686 from Patent EP1572962.JD391840 - Sequence 372864 from Patent EP1572962.JD524642 - Sequence 505666 from Patent EP1572962.JD350806 - Sequence 331830 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: FAM86C, NM_152563, NP_689776, Q9NVL1-2UCSC ID: uc001oqw.4RefSeq Accession: NM_152563
Protein: Q9NVL1-2 , splice isoform of Q9NVL1
CCDS: CCDS8202.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_152563.2
exon count:
4 CDS single in 3' UTR:
no
RNA size:
2025
ORF size:
396 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
905.00 frame shift in genome:
no
% Coverage:
99.21
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.