Human Gene HIKESHI (uc001pbv.3)
  Description: Homo sapiens chromosome 11 open reading frame 73 (HIKESHI), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr11:86,014,398-86,056,985 Size: 42,588 Total Exon Count: 6 Strand: +


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:86,014,398-86,056,985)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVLynxMalacardsPubMedTreefam
Wikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HIKESHI
Diseases sorted by gene-association score: leukodystrophy, hypomyelinating, 13* (829), hypomyelinating leukoencephalopathy (25)
* = Manually curated disease association

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.86 RPKM in Ovary
Total median expression: 573.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF161527 - Homo sapiens HSPC179 mRNA, complete cds.
AF161487 - Homo sapiens HSPC138 mRNA, complete cds.
AK001447 - Homo sapiens cDNA FLJ10585 fis, clone NT2RP2003793.
AK223198 - Homo sapiens mRNA for hypothetical protein HSPC138 variant, clone: REC01582.
BC015991 - Homo sapiens chromosome 11 open reading frame 73, mRNA (cDNA clone MGC:2697 IMAGE:2820691), complete cds.
BC021621 - Homo sapiens chromosome 11 open reading frame 73, mRNA (cDNA clone MGC:4325 IMAGE:2820691), complete cds.
AK298763 - Homo sapiens cDNA FLJ57139 complete cds.
BC018080 - Homo sapiens chromosome 11 open reading frame 73, mRNA (cDNA clone MGC:26811 IMAGE:4798958), complete cds.
BC001677 - Homo sapiens chromosome 11 open reading frame 73, mRNA (cDNA clone MGC:2700 IMAGE:2820772), complete cds.
BC006476 - Homo sapiens chromosome 11 open reading frame 73, mRNA (cDNA clone MGC:4328 IMAGE:2820772), complete cds.
DQ895977 - Synthetic construct Homo sapiens clone IMAGE:100010437; FLH189181.01L; RZPDo839C0664D chromosome 11 open reading frame 73 (C11orf73) gene, encodes complete protein.
DQ892731 - Synthetic construct clone IMAGE:100005361; FLH189185.01X; RZPDo839C0674D chromosome 11 open reading frame 73 (C11orf73) gene, encodes complete protein.
CU674828 - Synthetic construct Homo sapiens gateway clone IMAGE:100018013 5' read C11orf73 mRNA.
CU676162 - Synthetic construct Homo sapiens gateway clone IMAGE:100020237 5' read C11orf73 mRNA.
KJ893923 - Synthetic construct Homo sapiens clone ccsbBroadEn_03317 C11orf73 gene, encodes complete protein.
KJ898906 - Synthetic construct Homo sapiens clone ccsbBroadEn_08300 C11orf73 gene, encodes complete protein.
AF151082 - Homo sapiens HSPC248 mRNA, complete cds.
AK125010 - Homo sapiens cDNA FLJ43020 fis, clone BRTHA2018504.

-  Other Names for This Gene
  Alternate Gene Symbols: C11orf73, NR_024596
UCSC ID: uc001pbv.3
RefSeq Accession: NR_024596

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_024596.1
exon count: 6CDS single in 3' UTR: no RNA size: 1129
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 428.50frame shift in genome: no % Coverage: 95.57
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.