Human Gene RACGAP1P (uc001rol.3)
  Description: Homo sapiens Rac GTPase activating protein 1 pseudogene (RACGAP1P), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr12:45,456,401-45,459,194 Size: 2,794 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:45,456,401-45,459,194)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.03 RPKM in Testis
Total median expression: 0.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  KJ900868 - Synthetic construct Homo sapiens clone ccsbBroadEn_10262 RACGAP1P gene, encodes complete protein.
AF334184 - Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.
JD243532 - Sequence 224556 from Patent EP1572962.
JD046910 - Sequence 27934 from Patent EP1572962.
JD237881 - Sequence 218905 from Patent EP1572962.
JD147733 - Sequence 128757 from Patent EP1572962.
JD296088 - Sequence 277112 from Patent EP1572962.
JD066743 - Sequence 47767 from Patent EP1572962.
BC125190 - Homo sapiens Rac GTPase activating protein 1 pseudogene, mRNA (cDNA clone IMAGE:40122674).
BC125191 - Homo sapiens Rac GTPase activating protein 1 pseudogene, mRNA (cDNA clone IMAGE:40122680).
JD437929 - Sequence 418953 from Patent EP1572962.
JD437928 - Sequence 418952 from Patent EP1572962.
JD095689 - Sequence 76713 from Patent EP1572962.
JD202385 - Sequence 183409 from Patent EP1572962.
JD110065 - Sequence 91089 from Patent EP1572962.
JD525000 - Sequence 506024 from Patent EP1572962.
JD287089 - Sequence 268113 from Patent EP1572962.
LF337942 - JP 2014500723-A/145445: Polycomb-Associated Non-Coding RNAs.
JD270564 - Sequence 251588 from Patent EP1572962.
MA573519 - JP 2018138019-A/145445: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_026583
UCSC ID: uc001rol.3
RefSeq Accession: NR_026583

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_026583.1
exon count: 1CDS single in 3' UTR: no RNA size: 2794
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 586.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.