Human Gene IKBIP (uc001tfx.4)
Description: Homo sapiens IKBKB interacting protein (IKBIP), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr12:99,018,030-99,038,829 Size: 20,800 Total Exon Count: 3 Strand: -
Coding Region
Position: hg19 chr12:99,019,708-99,038,479 Size: 18,772 Coding Exon Count: 3
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on Q70UQ0-4
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BC051372 - Homo sapiens IKK interacting protein, mRNA (cDNA clone IMAGE:6575635), complete cds.AJ539426 - Homo sapiens mRNA for IKIP2 (IKIP gene).AJ539427 - Homo sapiens mRNA for IKIP3 (IKIP gene).AK123069 - Homo sapiens cDNA FLJ41074 fis, clone 3NB692008729.BC107572 - Homo sapiens IKK interacting protein, mRNA (cDNA clone IMAGE:3685751), partial cds.BC029415 - Homo sapiens IKK interacting protein, mRNA (cDNA clone IMAGE:4772912), complete cds.AJ539425 - Homo sapiens mRNA for IKIP1 (IKIP gene).BC058933 - Homo sapiens IKK interacting protein, mRNA (cDNA clone MGC:65157 IMAGE:5541278), complete cds.JD211868 - Sequence 192892 from Patent EP1572962.JD159661 - Sequence 140685 from Patent EP1572962.AK055613 - Homo sapiens cDNA FLJ31051 fis, clone HSYRA2000605, weakly similar to MYOSIN HEAVY CHAIN, CLONE 203.JD410467 - Sequence 391491 from Patent EP1572962.JD350760 - Sequence 331784 from Patent EP1572962.JD404583 - Sequence 385607 from Patent EP1572962.JD344146 - Sequence 325170 from Patent EP1572962.JD344145 - Sequence 325169 from Patent EP1572962.JD235288 - Sequence 216312 from Patent EP1572962.JD251655 - Sequence 232679 from Patent EP1572962.JD236343 - Sequence 217367 from Patent EP1572962.JD236810 - Sequence 217834 from Patent EP1572962.JD519655 - Sequence 500679 from Patent EP1572962.JD535982 - Sequence 517006 from Patent EP1572962.JD315650 - Sequence 296674 from Patent EP1572962.JD287364 - Sequence 268388 from Patent EP1572962.JD304604 - Sequence 285628 from Patent EP1572962.JD037554 - Sequence 18578 from Patent EP1572962.JD051997 - Sequence 33021 from Patent EP1572962.HQ448064 - Synthetic construct Homo sapiens clone IMAGE:100071443; CCSB011952_01 IKK interacting protein (IKIP) gene, encodes complete protein.KJ895358 - Synthetic construct Homo sapiens clone ccsbBroadEn_04752 IKBIP gene, encodes complete protein.CU691338 - Synthetic construct Homo sapiens gateway clone IMAGE:100021677 5' read IKIP mRNA.JD525159 - Sequence 506183 from Patent EP1572962.JD251227 - Sequence 232251 from Patent EP1572962.JD218450 - Sequence 199474 from Patent EP1572962.JD394087 - Sequence 375111 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: IKIP, NM_153687, NP_710154, Q70UQ0-4, uc001tfx.3UCSC ID: uc001tfx.4RefSeq Accession: NM_153687
Protein: Q70UQ0-4 , splice isoform of Q70UQ0
CCDS: CCDS9068.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_153687.3
exon count:
3 CDS single in 3' UTR:
no
RNA size:
3175
ORF size:
1134 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2312.00 frame shift in genome:
no
% Coverage:
99.59
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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