Human Gene SART3 (uc001tnb.3)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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MalaCards Disease Associations
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Comparative Toxicogenomics Database (CTD)
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Common Gene Haplotype Alleles
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Press "+" in the title bar above to open this section.
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
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The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
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Protein Domain and Structure Information
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ModBase Predicted Comparative 3D Structure on Q15020-3
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AB020880 - Homo sapiens mRNA for squamous cell carcinoma antigen SART-3, complete cds. D63879 - Homo sapiens mRNA for KIAA0156 gene, complete cds. AF387506 - Homo sapiens KIAA0156 isoform mRNA, complete cds. AK290209 - Homo sapiens cDNA FLJ76238 complete cds, highly similar to Homo sapiens squamous cell carcinoma antigen recognised by T cells 3 (SART3), mRNA. BC093784 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone MGC:120819 IMAGE:7939629), complete cds. BC111983 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone MGC:138188 IMAGE:8327451), complete cds. BC143253 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone MGC:176772 IMAGE:9051755), complete cds. KJ898083 - Synthetic construct Homo sapiens clone ccsbBroadEn_07477 SART3 gene, encodes complete protein. KR712178 - Synthetic construct Homo sapiens clone CCSBHm_00036630 SART3 (SART3) mRNA, encodes complete protein. AB385287 - Synthetic construct DNA, clone: pF1KA0156, Homo sapiens SART3 gene for squamous cell carcinoma antigen recognized by T-cells 3, complete cds, without stop codon, in Flexi system. AK225174 - Homo sapiens mRNA for squamous cell carcinoma antigen recognized by T cells 3 variant, clone: CBR08707. AK304834 - Homo sapiens cDNA FLJ51777 complete cds, highly similar to Squamous cell carcinoma antigen recognized byT-cells 3. BC103706 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone IMAGE:6162918), partial cds. BC004547 - Homo sapiens squamous cell carcinoma antigen recognised by T cells 3, mRNA (cDNA clone IMAGE:3958574), partial cds. BC024279 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone IMAGE:4810833), with apparent retained intron. BC032601 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone IMAGE:5534381), partial cds. BC015627 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone IMAGE:4844039), with apparent retained intron. BC041638 - Homo sapiens squamous cell carcinoma antigen recognized by T cells 3, mRNA (cDNA clone IMAGE:4844061), complete cds.
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Other Names for This Gene
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Alternate Gene Symbols: BC041638, KIAA0156, Q15020-3, TIP110 UCSC ID: uc001tnb.3 Representative RNA: BC041638
Protein: Q15020-3, splice isoform of Q15020
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Gene Model Information
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category:
| coding
| nonsense-mediated-decay:
| no
| RNA accession:
| BC041638.1
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exon count:
| 1 | CDS single in 3' UTR:
| no
| RNA size:
| 1217 |
ORF size:
| 390 | CDS single in intron:
| no
| Alignment % ID:
| 99.66 |
txCdsPredict score:
| 802.00 | frame shift in genome:
| no
| % Coverage:
| 97.29 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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