Human Gene SMIM2 (uc001uzh.1)
  Description: Homo sapiens hypothetical protein SMIM2, mRNA (cDNA clone MGC:5590 IMAGE:3460233), complete cds.
Transcript (Including UTRs)
   Position: hg19 chr13:44,717,287-44,735,393 Size: 18,107 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:44,717,287-44,735,393)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
H-INVHGNCHPRDPubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.39 RPKM in Testis
Total median expression: 17.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC000868 - Homo sapiens hypothetical protein MGC5590, mRNA (cDNA clone MGC:5590 IMAGE:3460233), complete cds.
JD300503 - Sequence 281527 from Patent EP1572962.
JD307505 - Sequence 288529 from Patent EP1572962.
JD163958 - Sequence 144982 from Patent EP1572962.
JD546866 - Sequence 527890 from Patent EP1572962.
JD181806 - Sequence 162830 from Patent EP1572962.
JD556896 - Sequence 537920 from Patent EP1572962.
JD432721 - Sequence 413745 from Patent EP1572962.
JD338913 - Sequence 319937 from Patent EP1572962.
JD074392 - Sequence 55416 from Patent EP1572962.
JD524839 - Sequence 505863 from Patent EP1572962.
JD062633 - Sequence 43657 from Patent EP1572962.
KJ903136 - Synthetic construct Homo sapiens clone ccsbBroadEn_12530 C13orf44 gene, encodes complete protein.
JD072811 - Sequence 53835 from Patent EP1572962.
JD444716 - Sequence 425740 from Patent EP1572962.
JD318940 - Sequence 299964 from Patent EP1572962.
JD159548 - Sequence 140572 from Patent EP1572962.
JD164264 - Sequence 145288 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC000868, MGC5590
UCSC ID: uc001uzh.1
Representative RNA: BC000868

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC000868.1
exon count: 3CDS single in 3' UTR: no RNA size: 1240
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 590.50frame shift in genome: no % Coverage: 97.90
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.