Human Gene ATP11A-AS1 (uc001vsk.3)
  Description: Homo sapiens cDNA clone IMAGE:5272198.
Transcript (Including UTRs)
   Position: hg19 chr13:113,399,763-113,409,007 Size: 9,245 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:113,399,763-113,409,007)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
HGNCPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.87 RPKM in Testis
Total median expression: 2.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC041346 - Homo sapiens cDNA clone IMAGE:5272198.
JD541083 - Sequence 522107 from Patent EP1572962.
JD458821 - Sequence 439845 from Patent EP1572962.
JD239834 - Sequence 220858 from Patent EP1572962.
JD056309 - Sequence 37333 from Patent EP1572962.
JD458821 - Sequence 439845 from Patent EP1572962.
JD239833 - Sequence 220857 from Patent EP1572962.
JD311589 - Sequence 292613 from Patent EP1572962.
JD423403 - Sequence 404427 from Patent EP1572962.
JD331549 - Sequence 312573 from Patent EP1572962.
JD531379 - Sequence 512403 from Patent EP1572962.
JD360019 - Sequence 341043 from Patent EP1572962.
JD366609 - Sequence 347633 from Patent EP1572962.
JD230050 - Sequence 211074 from Patent EP1572962.
JD490043 - Sequence 471067 from Patent EP1572962.
JD279729 - Sequence 260753 from Patent EP1572962.
JD437141 - Sequence 418165 from Patent EP1572962.
JD335353 - Sequence 316377 from Patent EP1572962.
JD442945 - Sequence 423969 from Patent EP1572962.
JD532250 - Sequence 513274 from Patent EP1572962.
JD558759 - Sequence 539783 from Patent EP1572962.
JD201433 - Sequence 182457 from Patent EP1572962.
JD523794 - Sequence 504818 from Patent EP1572962.
JD085883 - Sequence 66907 from Patent EP1572962.
JD447873 - Sequence 428897 from Patent EP1572962.
JD319351 - Sequence 300375 from Patent EP1572962.
JD287062 - Sequence 268086 from Patent EP1572962.
JD291901 - Sequence 272925 from Patent EP1572962.
JD206755 - Sequence 187779 from Patent EP1572962.
JD095502 - Sequence 76526 from Patent EP1572962.
JD446287 - Sequence 427311 from Patent EP1572962.
JD368406 - Sequence 349430 from Patent EP1572962.
JD067943 - Sequence 48967 from Patent EP1572962.
JD491214 - Sequence 472238 from Patent EP1572962.
JD513051 - Sequence 494075 from Patent EP1572962.
JD412958 - Sequence 393982 from Patent EP1572962.
JD187524 - Sequence 168548 from Patent EP1572962.
JD412957 - Sequence 393981 from Patent EP1572962.
JD098201 - Sequence 79225 from Patent EP1572962.
JD048694 - Sequence 29718 from Patent EP1572962.
JD094473 - Sequence 75497 from Patent EP1572962.
JD411459 - Sequence 392483 from Patent EP1572962.
JD562393 - Sequence 543417 from Patent EP1572962.
JD447471 - Sequence 428495 from Patent EP1572962.
JD533386 - Sequence 514410 from Patent EP1572962.
JD137557 - Sequence 118581 from Patent EP1572962.
JD338619 - Sequence 319643 from Patent EP1572962.
JD474894 - Sequence 455918 from Patent EP1572962.
JD338094 - Sequence 319118 from Patent EP1572962.
JD380780 - Sequence 361804 from Patent EP1572962.
JD203546 - Sequence 184570 from Patent EP1572962.
AK093292 - Homo sapiens cDNA FLJ35973 fis, clone TESTI2013268.
AX748036 - Sequence 1561 from Patent EP1308459.
JD404825 - Sequence 385849 from Patent EP1572962.
JD317925 - Sequence 298949 from Patent EP1572962.
JD196515 - Sequence 177539 from Patent EP1572962.
JD511278 - Sequence 492302 from Patent EP1572962.
JD072894 - Sequence 53918 from Patent EP1572962.
JD317795 - Sequence 298819 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC041346
UCSC ID: uc001vsk.3
Representative RNA: BC041346

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC041346.1
exon count: 2CDS single in 3' UTR: no RNA size: 2216
ORF size: 0CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 230.00frame shift in genome: no % Coverage: 98.69
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.