The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Descriptions from all associated GenBank mRNAs
AB977101 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: E(2)-TRA104. AB977274 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA7. BC071738 - Homo sapiens T cell receptor alpha locus, mRNA (cDNA clone IMAGE:5203575), partial cds. AB977295 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA28. AB306059 - Homo sapiens mRNA for T cell receptor alpha variable 8, partial cds, clone: un 145-1. AB305757 - Homo sapiens mRNA for T cell receptor alpha variable 8, partial cds, clone: SEB 349. M17650 - Human T-cell receptor active alpha-chain V-region (V-J-C) mRNA, partial cds, clone AE24A. AB976723 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(1)-TRA11. AB977072 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: LEM(2)-TRA115. AB977428 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA162. AB976824 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(1)-TRA78. AB977199 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(3)-TRA36. AB976996 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(2)-TRA32. X58332 - H.sapiens TCRA PS1 mRNA. AB977471 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA205. KX076016 - Homo sapiens isolate SG_Subject7 clone 243-7 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB976832 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(1)-TRA107. U39103 - Homo sapiens T cell receptor alpha chain mRNA, partial cds. KX074246 - Homo sapiens isolate PB_Subject1 clone 25-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KM004149 - Homo sapiens clone 124 T cell receptor beta mRNA, partial cds. KM004421 - Homo sapiens clone 396 T cell receptor alpha mRNA, partial cds. KM004136 - Homo sapiens clone 111 T cell receptor beta mRNA, partial cds. KM004345 - Homo sapiens clone 320 T cell receptor alpha mRNA, partial cds. KM004411 - Homo sapiens clone 386 T cell receptor alpha mRNA, partial cds. KM004988 - Homo sapiens clone 964 T cell receptor alpha mRNA, partial cds. KM004054 - Homo sapiens clone 29 T cell receptor beta mRNA, partial cds. KM004873 - Homo sapiens clone 849 T cell receptor alpha mRNA, partial cds. MG789977 - Homo sapiens isolate Sample2_Cell109_2B6_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789030 - Homo sapiens isolate Sample1_Cell18_11B8_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789539 - Homo sapiens isolate Sample1_Cell242_16C8_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789544 - Homo sapiens isolate Sample1_Cell244_16D2_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790074 - Homo sapiens isolate Sample2_Cell155_2F5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG790234 - Homo sapiens isolate Sample2_Cell226_4H2_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790347 - Homo sapiens isolate Sample3_Cell29_1C5_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790374 - Homo sapiens isolate Sample3_Cell40_1D5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG790628 - Homo sapiens isolate Sample3_Cell156_2F7_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. KM004095 - Homo sapiens clone 70 T cell receptor beta mRNA, partial cds. KM004240 - Homo sapiens clone 215 T cell receptor beta mRNA, partial cds. KM004381 - Homo sapiens clone 356 T cell receptor alpha mRNA, partial cds. KM004475 - Homo sapiens clone 450 T cell receptor alpha mRNA, partial cds. KM004902 - Homo sapiens clone 878 T cell receptor alpha mRNA, partial cds. KX074767 - Homo sapiens isolate PB_Subject4 clone 546-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075091 - Homo sapiens isolate PB_Subject3 clone 870-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077165 - Homo sapiens isolate SG_Subject8 clone 1392-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076011 - Homo sapiens isolate SG_Subject7 clone 238-7 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076772 - Homo sapiens isolate SG_Subject9 clone 999-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076768 - Homo sapiens isolate SG_Subject9 clone 995-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076559 - Homo sapiens isolate SG_Subject3 clone 786-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074277 - Homo sapiens isolate PB_Subject1 clone 56-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076156 - Homo sapiens isolate SG_Subject7 clone 383-7 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076250 - Homo sapiens isolate SG_Subject4 clone 477-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075343 - Homo sapiens isolate PB_Subject9 clone 1122-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076041 - Homo sapiens isolate SG_Subject7 clone 268-7 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074971 - Homo sapiens isolate PB_Subject5 clone 750-5 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB977244 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: LEM(3)-TRA145. AB977120 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(3)-TRA14. AB977235 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: LEM(3)-TRA113. KJ026960 - Homo sapiens isolate 1435 T cell receptor variable alpha chain mRNA, partial cds. AB306092 - Homo sapiens mRNA for T cell receptor alpha variable 8, partial cds, clone: un 227. AB306051 - Homo sapiens mRNA for T cell receptor alpha variable 8, partial cds, clone: un 132. AB306091 - Homo sapiens mRNA for T cell receptor alpha variable 8, partial cds, clone: un 223. AB306050 - Homo sapiens mRNA for T cell receptor alpha variable 8, partial cds, clone: un 123. K02777 - Human T-cell receptor active alpha-chain mRNA from Jurkat cell line. KX076665 - Homo sapiens isolate SG_Subject9 clone 892-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075445 - Homo sapiens isolate PB_Subject10 clone 1224-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077067 - Homo sapiens isolate SG_Subject8 clone 1294-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074418 - Homo sapiens isolate PB_Subject2 clone 197-2 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076413 - Homo sapiens isolate SG_Subject5 clone 640-5 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075254 - Homo sapiens isolate PB_Subject9 clone 1033-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. M17667 - Human T-cell receptor active alpha-chain V-region (V-J-C) mRNA, partial cds, clone AB28. KM004828 - Homo sapiens clone 804 T cell receptor alpha mRNA, partial cds. KM004139 - Homo sapiens clone 114 T cell receptor beta mRNA, partial cds. KM004413 - Homo sapiens clone 388 T cell receptor alpha mRNA, partial cds. KM004083 - Homo sapiens clone 58 T cell receptor beta mRNA, partial cds. KM004371 - Homo sapiens clone 346 T cell receptor alpha mRNA, partial cds. MG790182 - Homo sapiens isolate Sample2_Cell204_3H6_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791183 - Homo sapiens isolate AA_Cell79_3G9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KM004925 - Homo sapiens clone 901 T cell receptor alpha mRNA, partial cds. MG789168 - Homo sapiens isolate Sample1_Cell77_11G11_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG791678 - Homo sapiens isolate AA_Cell313_6D7_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789477 - Homo sapiens isolate Sample1_Cell217_14H11_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790758 - Homo sapiens isolate Sample3_Cell210_4D11_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG791174 - Homo sapiens isolate AA_Cell75_3G5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789098 - Homo sapiens isolate Sample1_Cell46_11D12_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG789379 - Homo sapiens isolate Sample1_Cell170_12H4_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789677 - Homo sapiens isolate Sample1_Cell303_19H8_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789176 - Homo sapiens isolate Sample1_Cell80_11H4_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG790767 - Homo sapiens isolate Sample3_Cell214_4F7_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KX076565 - Homo sapiens isolate SG_Subject3 clone 792-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074520 - Homo sapiens isolate PB_Subject7 clone 299-7 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075887 - Homo sapiens isolate SG_Subject2 clone 114-2 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076355 - Homo sapiens isolate SG_Subject5 clone 582-5 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074553 - Homo sapiens isolate PB_Subject7 clone 332-7 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074781 - Homo sapiens isolate PB_Subject4 clone 560-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076568 - Homo sapiens isolate SG_Subject3 clone 795-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. X61078 - Human mRNA for T cell receptor, clone IGRA23. KX076614 - Homo sapiens isolate SG_Subject6 clone 841-6 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076488 - Homo sapiens isolate SG_Subject3 clone 715-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076223 - Homo sapiens isolate SG_Subject4 clone 450-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074806 - Homo sapiens isolate PB_Subject5 clone 585-5 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075120 - Homo sapiens isolate PB_Subject3 clone 899-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
US Server
