Human Gene BAHD1 (uc001zlt.2)
  Description: Homo sapiens bromo adjacent homology domain containing 1 (BAHD1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr15:40,731,920-40,760,441 Size: 28,522 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr15:40,750,664-40,758,329 Size: 7,666 Coding Exon Count: 6 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:40,731,920-40,760,441)mRNA (may differ from genome)Protein (779 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMGIOMIM
PubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): BAHD1
CDC HuGE Published Literature: BAHD1

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.94 RPKM in Testis
Total median expression: 431.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -98.90259-0.382 Picture PostScript Text
3' UTR -917.452112-0.434 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF01426 - BAH domain

ModBase Predicted Comparative 3D Structure on Q8TBE0-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AB023162 - Homo sapiens KIAA0945 mRNA for KIAA0945 protein.
JD241914 - Sequence 222938 from Patent EP1572962.
JD554669 - Sequence 535693 from Patent EP1572962.
JD259363 - Sequence 240387 from Patent EP1572962.
JD194071 - Sequence 175095 from Patent EP1572962.
BC022782 - Homo sapiens bromo adjacent homology domain containing 1, mRNA (cDNA clone MGC:9439 IMAGE:3903581), complete cds.
AB384054 - Synthetic construct DNA, clone: pF1KSDA0945, Homo sapiens BAHD1 gene for bromo adjacent homology domain-containing protein 1, complete cds, without stop codon, in Flexi system.
CU692710 - Synthetic construct Homo sapiens gateway clone IMAGE:100020080 5' read BAHD1 mRNA.
JF432274 - Synthetic construct Homo sapiens clone IMAGE:100073446 bromo adjacent homology domain containing 1 (BAHD1) gene, encodes complete protein.
DQ585845 - Homo sapiens piRNA piR-52957, complete sequence.
AL833923 - Homo sapiens mRNA; cDNA DKFZp434J0510 (from clone DKFZp434J0510).
JD056231 - Sequence 37255 from Patent EP1572962.
JD253816 - Sequence 234840 from Patent EP1572962.
JD367910 - Sequence 348934 from Patent EP1572962.
JD065828 - Sequence 46852 from Patent EP1572962.
JD466522 - Sequence 447546 from Patent EP1572962.
JD323531 - Sequence 304555 from Patent EP1572962.
JD494467 - Sequence 475491 from Patent EP1572962.
JD260408 - Sequence 241432 from Patent EP1572962.
JD214638 - Sequence 195662 from Patent EP1572962.
JD264382 - Sequence 245406 from Patent EP1572962.
JD439718 - Sequence 420742 from Patent EP1572962.
JD124837 - Sequence 105861 from Patent EP1572962.
JD137527 - Sequence 118551 from Patent EP1572962.
JD516872 - Sequence 497896 from Patent EP1572962.
JD382476 - Sequence 363500 from Patent EP1572962.
JD188313 - Sequence 169337 from Patent EP1572962.
JD558122 - Sequence 539146 from Patent EP1572962.
JD536003 - Sequence 517027 from Patent EP1572962.
JD160108 - Sequence 141132 from Patent EP1572962.
JD110686 - Sequence 91710 from Patent EP1572962.
JD214511 - Sequence 195535 from Patent EP1572962.
JD220374 - Sequence 201398 from Patent EP1572962.
JD272844 - Sequence 253868 from Patent EP1572962.
JD326358 - Sequence 307382 from Patent EP1572962.
JD515729 - Sequence 496753 from Patent EP1572962.
DQ585776 - Homo sapiens piRNA piR-52888, complete sequence.
JD339889 - Sequence 320913 from Patent EP1572962.
JD549924 - Sequence 530948 from Patent EP1572962.
JD401102 - Sequence 382126 from Patent EP1572962.
JD159317 - Sequence 140341 from Patent EP1572962.
JD441891 - Sequence 422915 from Patent EP1572962.
JD086638 - Sequence 67662 from Patent EP1572962.
JD160301 - Sequence 141325 from Patent EP1572962.
JD224346 - Sequence 205370 from Patent EP1572962.
JD379438 - Sequence 360462 from Patent EP1572962.
JD279131 - Sequence 260155 from Patent EP1572962.
JD109345 - Sequence 90369 from Patent EP1572962.
JD294440 - Sequence 275464 from Patent EP1572962.
JD222392 - Sequence 203416 from Patent EP1572962.
JD231272 - Sequence 212296 from Patent EP1572962.
JD399998 - Sequence 381022 from Patent EP1572962.
JD338583 - Sequence 319607 from Patent EP1572962.
JD483401 - Sequence 464425 from Patent EP1572962.
JD544179 - Sequence 525203 from Patent EP1572962.
JD187207 - Sequence 168231 from Patent EP1572962.
JD170536 - Sequence 151560 from Patent EP1572962.
JD474521 - Sequence 455545 from Patent EP1572962.
JD474175 - Sequence 455199 from Patent EP1572962.
JD483400 - Sequence 464424 from Patent EP1572962.
JD294919 - Sequence 275943 from Patent EP1572962.
JD221224 - Sequence 202248 from Patent EP1572962.
JD073960 - Sequence 54984 from Patent EP1572962.
JD548461 - Sequence 529485 from Patent EP1572962.
JD544018 - Sequence 525042 from Patent EP1572962.
JD503124 - Sequence 484148 from Patent EP1572962.
JD075781 - Sequence 56805 from Patent EP1572962.
JD468971 - Sequence 449995 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AB023162, KIAA0945, NM_014952, NP_055767, Q8TBE0-2
UCSC ID: uc001zlt.2
RefSeq Accession: NM_014952
Protein: Q8TBE0-2, splice isoform of Q8TBE0 CCDS: CCDS10058.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AB023162.1
exon count: 7CDS single in 3' UTR: no RNA size: 4696
ORF size: 2340CDS single in intron: no Alignment % ID: 99.98
txCdsPredict score: 4780.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.