Human Gene ZSCAN32 (uc002cux.4)
Description: Homo sapiens zinc finger and SCAN domain containing 32 (ZSCAN32), mRNA.
Transcript (Including UTRs)
Position: hg19 chr16:3,432,085-3,451,013 Size: 18,929 Total Exon Count: 7 Strand: -
Coding Region
Position: hg19 chr16:3,432,852-3,447,554 Size: 14,703 Coding Exon Count: 6
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Q6WMU8_HUMAN
DESCRIPTION: SubName: Full=Zinc finger protein 434; SubName: Full=cDNA FLJ77128, highly similar to Homo sapiens zinc finger protein 434 (ZNF434) mRNA;
SIMILARITY: Contains 1 SCAN box domain.
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR008916 - Retrov_capsid_C
IPR003309 - Tscrpt_reg_SCAN
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd
Pfam Domains: PF00096 - Zinc finger, C2H2 type
PF02023 - SCAN domain
PF13837 - Myb/SANT-like DNA-binding domain
PF13894 - C2H2-type zinc finger
PF13912 - C2H2-type zinc finger
PF13913 - zinc-finger of a C2HC-type
SCOP Domains: 48695 - Multiheme cytochromes
109640 - KRAB domain (Kruppel-associated box, Pfam 01352)
57667 - C2H2 and C2HC zinc fingers
ModBase Predicted Comparative 3D Structure on Q6WMU8
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
AK000424 - Homo sapiens cDNA FLJ20417 fis, clone KAT02301.BC017015 - Homo sapiens zinc finger protein 434, mRNA (cDNA clone IMAGE:3846413), with apparent retained intron.AY279347 - Homo sapiens zinc finger protein 434 (ZNF434) mRNA, complete cds.AY261676 - Homo sapiens zinc finger protein mRNA, complete cds.JD280008 - Sequence 261032 from Patent EP1572962.JD432738 - Sequence 413762 from Patent EP1572962.AK056463 - Homo sapiens cDNA FLJ31901 fis, clone NT2RP7004204, weakly similar to ZINC FINGER PROTEIN MLZ-4.AK291213 - Homo sapiens cDNA FLJ77128 complete cds, highly similar to Homo sapiens zinc finger protein 434 (ZNF434) mRNA.AK301586 - Homo sapiens cDNA FLJ54764 complete cds, highly similar to Zinc finger protein 434.JD217841 - Sequence 198865 from Patent EP1572962.JD061670 - Sequence 42694 from Patent EP1572962.JD073385 - Sequence 54409 from Patent EP1572962.JD564792 - Sequence 545816 from Patent EP1572962.JD401374 - Sequence 382398 from Patent EP1572962.DQ570596 - Homo sapiens piRNA piR-30708, complete sequence.JD199126 - Sequence 180150 from Patent EP1572962.JD074446 - Sequence 55470 from Patent EP1572962.JD044678 - Sequence 25702 from Patent EP1572962.JD342644 - Sequence 323668 from Patent EP1572962.BC002859 - Homo sapiens zinc finger protein 434, mRNA (cDNA clone MGC:4179 IMAGE:3638050), complete cds.AY279348 - Homo sapiens truncated zinc finger protein 434 isoform (ZNF434) mRNA, complete cds.AK303338 - Homo sapiens cDNA FLJ56278 complete cds, highly similar to Zinc finger protein 434.AK299070 - Homo sapiens cDNA FLJ54133 complete cds, highly similar to Zinc finger protein 434.KJ902718 - Synthetic construct Homo sapiens clone ccsbBroadEn_12112 ZNF434 gene, encodes complete protein.CU678248 - Synthetic construct Homo sapiens gateway clone IMAGE:100018626 5' read ZNF434 mRNA.
Other Names for This Gene
Alternate Gene Symbols: BC002859, NM_017810, NP_060280, Q6WMU8, Q6WMU8_HUMAN, ZNF434UCSC ID: uc002cux.4RefSeq Accession: NM_017810
Protein: Q6WMU8
CCDS: CCDS66921.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
BC002859.2
exon count:
7 CDS single in 3' UTR:
no
RNA size:
1491
ORF size:
2091 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
4267.00 frame shift in genome:
no
% Coverage:
98.26
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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