Human Gene NPIPB3 (uc002diz.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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D86974 - Homo sapiens mRNA for KIAA0220 gene, partial cds. BC090929 - Homo sapiens SMG1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene, mRNA (cDNA clone IMAGE:3074295), partial cds. AK300040 - Homo sapiens cDNA FLJ54878 complete cds, highly similar to Serine/threonine-protein kinase SMG1 (EC 2.7.11.1). JD503424 - Sequence 484448 from Patent EP1572962. BX647335 - Homo sapiens mRNA; cDNA DKFZp779K0112 (from clone DKFZp779K0112). JD565424 - Sequence 546448 from Patent EP1572962. JD051927 - Sequence 32951 from Patent EP1572962. JD420835 - Sequence 401859 from Patent EP1572962. JD369375 - Sequence 350399 from Patent EP1572962. JD382738 - Sequence 363762 from Patent EP1572962. JD382751 - Sequence 363775 from Patent EP1572962. JD281835 - Sequence 262859 from Patent EP1572962. JD357391 - Sequence 338415 from Patent EP1572962. JD525198 - Sequence 506222 from Patent EP1572962. JD342878 - Sequence 323902 from Patent EP1572962. JD107051 - Sequence 88075 from Patent EP1572962. JD184265 - Sequence 165289 from Patent EP1572962. JD207979 - Sequence 189003 from Patent EP1572962. JD486566 - Sequence 467590 from Patent EP1572962. JD562031 - Sequence 543055 from Patent EP1572962. JD175133 - Sequence 156157 from Patent EP1572962. JD156042 - Sequence 137066 from Patent EP1572962. JD113014 - Sequence 94038 from Patent EP1572962. JD170908 - Sequence 151932 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: BX647335, LOC100271836 UCSC ID: uc002diz.1 RefSeq Accession: NR_027155
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| no
| RNA accession:
| BX647335.1
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exon count:
| 8 | CDS single in 3' UTR:
| no
| RNA size:
| 2563 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.80 |
txCdsPredict score:
| 200.00 | frame shift in genome:
| no
| % Coverage:
| 99.22 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 3 |
has end codon:
| no
| retained intron:
| yes
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 895 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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