Human Gene NPIPB3 (uc002diz.1)
  Description: Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (NPIPB3), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:21,458,834-21,468,260 Size: 9,427 Total Exon Count: 8 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:21,458,834-21,468,260)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.25 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 23.75 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  D86974 - Homo sapiens mRNA for KIAA0220 gene, partial cds.
BC090929 - Homo sapiens SMG1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene, mRNA (cDNA clone IMAGE:3074295), partial cds.
AK300040 - Homo sapiens cDNA FLJ54878 complete cds, highly similar to Serine/threonine-protein kinase SMG1 (EC 2.7.11.1).
JD503424 - Sequence 484448 from Patent EP1572962.
BX647335 - Homo sapiens mRNA; cDNA DKFZp779K0112 (from clone DKFZp779K0112).
JD565424 - Sequence 546448 from Patent EP1572962.
JD051927 - Sequence 32951 from Patent EP1572962.
JD420835 - Sequence 401859 from Patent EP1572962.
JD369375 - Sequence 350399 from Patent EP1572962.
JD382738 - Sequence 363762 from Patent EP1572962.
JD382751 - Sequence 363775 from Patent EP1572962.
JD281835 - Sequence 262859 from Patent EP1572962.
JD357391 - Sequence 338415 from Patent EP1572962.
JD525198 - Sequence 506222 from Patent EP1572962.
JD342878 - Sequence 323902 from Patent EP1572962.
JD107051 - Sequence 88075 from Patent EP1572962.
JD184265 - Sequence 165289 from Patent EP1572962.
JD207979 - Sequence 189003 from Patent EP1572962.
JD486566 - Sequence 467590 from Patent EP1572962.
JD562031 - Sequence 543055 from Patent EP1572962.
JD175133 - Sequence 156157 from Patent EP1572962.
JD156042 - Sequence 137066 from Patent EP1572962.
JD113014 - Sequence 94038 from Patent EP1572962.
JD170908 - Sequence 151932 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BX647335, LOC100271836
UCSC ID: uc002diz.1
RefSeq Accession: NR_027155

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BX647335.1
exon count: 8CDS single in 3' UTR: no RNA size: 2563
ORF size: 0CDS single in intron: no Alignment % ID: 99.80
txCdsPredict score: 200.00frame shift in genome: no % Coverage: 99.22
has start codon: no stop codon in genome: no # of Alignments: 3
has end codon: no retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 895# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.