Human Gene ITGAD (uc010vfl.1)
  Description: Homo sapiens integrin, alpha D (ITGAD), mRNA.
RefSeq Summary (NM_005353): This gene belongs to the beta-2 integrin family of membrane glycoproteins, which are are composed of non-covalently linked alpha and beta subunits to form a heterodimer. It encodes the alpha subunit of the cell surface heterodimers and is involved in the activation and adhesion functions of leukocytes. The gene is located about 11kb downstream of the integrin subunit alpha X gene, another member of the integrin family. It is expressed in the tissue and circulating myeloid leukocytes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015].
Transcript (Including UTRs)
   Position: hg19 chr16:31,404,633-31,420,638 Size: 16,006 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr16:31,404,682-31,419,235 Size: 14,554 Coding Exon Count: 8 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:31,404,633-31,420,638)mRNA (may differ from genome)Protein (367 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMalacardsMGIPubMed
TreefamUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ITGAD
Diseases sorted by gene-association score: chronic monocytic leukemia (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.07 RPKM in Spleen
Total median expression: 12.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.8149-0.098 Picture PostScript Text
3' UTR -345.20895-0.386 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013519 - Int_alpha_beta-p
IPR002035 - VWF_A

Pfam Domains:
PF00092 - von Willebrand factor type A domain
PF13519 - von Willebrand factor type A domain

SCOP Domains:
69318 - Integrin alpha N-terminal domain
53300 - vWA-like

ModBase Predicted Comparative 3D Structure on B7Z6V7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007229 integrin-mediated signaling pathway


-  Descriptions from all associated GenBank mRNAs
  AK097160 - Homo sapiens cDNA FLJ39841 fis, clone SPLEN2014210, moderately similar to Rattus norvegicus alpha D integrin mRNA.
AB208945 - Homo sapiens mRNA for PREDICTED: integrin, alpha D variant protein.
AK301028 - Homo sapiens cDNA FLJ51333 complete cds, highly similar to Integrin alpha-D precursor.
BC156095 - Synthetic construct Homo sapiens clone IMAGE:100062383, MGC:190493 integrin, alpha D (ITGAD) mRNA, encodes complete protein.
AB384792 - Synthetic construct DNA, clone: pF1KB3338, Homo sapiens ITGAD gene for integrin alpha-D precursor, complete cds, without stop codon, in Flexi system.
U37028 - Human leukointegrin alpha d chain mRNA, partial cds.
JD432477 - Sequence 413501 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04810 - Regulation of actin cytoskeleton

-  Other Names for This Gene
  Alternate Gene Symbols: AK301028, B7Z6V7, B7Z6V7_HUMAN, uc002ebw.1
UCSC ID: uc010vfl.1
RefSeq Accession: NM_005353
Protein: B7Z6V7

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK301028.1
exon count: 9CDS single in 3' UTR: no RNA size: 1327
ORF size: 1104CDS single in intron: no Alignment % ID: 99.92
txCdsPredict score: 1862.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 819# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.