Human Gene MT1G (uc002eju.1)
Description: Homo sapiens metallothionein 1G (MT1G), mRNA.
Transcript (Including UTRs)
Position: hg19 chr16:56,700,653-56,701,977 Size: 1,325 Total Exon Count: 3 Strand: -
Coding Region
Position: hg19 chr16:56,700,791-56,701,905 Size: 1,115 Coding Exon Count: 3
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF00131 - Metallothionein
SCOP Domains: 57868 - Metallothionein
ModBase Predicted Comparative 3D Structure on P13640-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BC035287 - Homo sapiens metallothionein 1G, mRNA (cDNA clone IMAGE:5186753), with apparent retained intron.BC048334 - Homo sapiens, clone IMAGE:5185539, mRNA.LP896036 - Sequence 900 from Patent EP3253886.BC005311 - Homo sapiens metallothionein 1G, mRNA (cDNA clone IMAGE:3950443), with apparent retained intron.BC020757 - Homo sapiens metallothionein 1G, mRNA (cDNA clone MGC:22610 IMAGE:4767886), complete cds.JD559115 - Sequence 540139 from Patent EP1572962.JD094278 - Sequence 75302 from Patent EP1572962.JD062867 - Sequence 43891 from Patent EP1572962.JD204556 - Sequence 185580 from Patent EP1572962.DQ890540 - Synthetic construct clone IMAGE:100003170; FLH163874.01X; RZPDo839A04162D metallothionein 1G (MT1G) gene, encodes complete protein.EU176477 - Synthetic construct Homo sapiens clone IMAGE:100011329; FLH163873.01L; RZPDo839G01253D metallothionein 1G (MT1G) gene, encodes complete protein.AB528657 - Synthetic construct DNA, clone: pF1KB6701, Homo sapiens MT1G gene for metallothionein 1G, without stop codon, in Flexi system.JD480716 - Sequence 461740 from Patent EP1572962.S68954 - metallothionein MT-1g isoform [human, monocytes, mRNA Partial, 93 nt].JD534515 - Sequence 515539 from Patent EP1572962.JD520407 - Sequence 501431 from Patent EP1572962.
Biochemical and Signaling Pathways
Other Names for This Gene
Alternate Gene Symbols: MT1K, MT1M, NM_005950, NP_005941, P13640-2UCSC ID: uc002eju.1RefSeq Accession: NM_005950
Protein: P13640-2 , splice isoform of P13640
CCDS: CCDS10766.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_005950.1
exon count:
3 CDS single in 3' UTR:
no
RNA size:
396
ORF size:
186 CDS single in intron:
no
Alignment % ID:
99.24
txCdsPredict score:
572.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.