Human Gene CES2 (uc002eqq.3)
  Description: Homo sapiens carboxylesterase 2 (CES2), transcript variant 2, mRNA.
RefSeq Summary (NM_198061): This gene encodes a member of the carboxylesterase large family. The family members are responsible for the hydrolysis or transesterification of various xenobiotics, such as cocaine and heroin, and endogenous substrates with ester, thioester, or amide bonds. They may participate in fatty acyl and cholesterol ester metabolism, and may play a role in the blood-brain barrier system. The protein encoded by this gene is the major intestinal enzyme and functions in intestine drug clearance. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Oct 2010].
Transcript (Including UTRs)
   Position: hg19 chr16:66,968,347-66,978,994 Size: 10,648 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr16:66,969,347-66,977,928 Size: 8,582 Coding Exon Count: 12 

Page IndexSequence and LinksPrimersGenetic AssociationsMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:66,968,347-66,978,994)mRNA (may differ from genome)Protein (607 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMalacardsMGI
OMIMPubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): CES2
CDC HuGE Published Literature: CES2

-  MalaCards Disease Associations
  MalaCards Gene Search: CES2
Diseases sorted by gene-association score: fiedler's myocarditis (11), sparganosis (7), western equine encephalitis (7), cystic echinococcosis (6), parasitic helminthiasis infectious disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 157.12 RPKM in Small Intestine - Terminal Ileum
Total median expression: 1015.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -443.721000-0.444 Picture PostScript Text
3' UTR -329.811066-0.309 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002018 - CarbesteraseB
IPR019826 - Carboxylesterase_B_AS
IPR019819 - Carboxylesterase_B_CS

Pfam Domains:
PF00135 - Carboxylesterase family
PF07859 - alpha/beta hydrolase fold

SCOP Domains:
53474 - alpha/beta-Hydrolases

ModBase Predicted Comparative 3D Structure on Q4G0E9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0016787 hydrolase activity


-  Descriptions from all associated GenBank mRNAs
  BX538086 - Homo sapiens mRNA; cDNA DKFZp686H0466 (from clone DKFZp686H0466).
BC032095 - Homo sapiens carboxylesterase 2 (intestine, liver), mRNA (cDNA clone MGC:13148 IMAGE:4298532), complete cds.
AK095522 - Homo sapiens cDNA FLJ38203 fis, clone FCBBF1000403, highly similar to Human carboxylesterase (hCE-2) mRNA.
AL713761 - Homo sapiens mRNA; cDNA DKFZp434N0935 (from clone DKFZp434N0935).
AK290482 - Homo sapiens cDNA FLJ76104 complete cds, highly similar to Homo sapiens carboxylesterase 2 (intestine, liver) (CES2), transcript variant 1, mRNA.
AM392781 - Synthetic construct Homo sapiens clone IMAGE:100002511 for hypothetical protein (CES2 gene).
AB527125 - Synthetic construct DNA, clone: pF1KE0032, Homo sapiens CES2 gene for carboxylesterase 2, without stop codon, in Flexi system.
DQ896756 - Synthetic construct Homo sapiens clone IMAGE:100011216; FLH191746.01L; RZPDo839G0767D carboxylesterase 2 (intestine, liver) (CES2) gene, encodes complete protein.
DQ893022 - Synthetic construct clone IMAGE:100005652; FLH191750.01X; RZPDo839G0777D carboxylesterase 2 (intestine, liver) (CES2) gene, encodes complete protein.
BC098417 - Homo sapiens carboxylesterase 2 (intestine, liver), mRNA (cDNA clone IMAGE:6297807), partial cds.
BC071874 - Homo sapiens carboxylesterase 2 (intestine, liver), mRNA (cDNA clone IMAGE:6284741), partial cds.
AK222724 - Homo sapiens mRNA for carboxylesterase 2 isoform 1 variant, clone: COL09527.
Y09616 - H.sapiens mRNA for putative carboxylesterase.
D50579 - Homo sapiens mRNA for carboxylesterase, complete cds.
U60553 - Homo sapiens carboxylesterase (CE2) mRNA, complete cds.
JD265399 - Sequence 246423 from Patent EP1572962.
JD515748 - Sequence 496772 from Patent EP1572962.
JD469973 - Sequence 450997 from Patent EP1572962.
JD439750 - Sequence 420774 from Patent EP1572962.
JD154921 - Sequence 135945 from Patent EP1572962.
JD460886 - Sequence 441910 from Patent EP1572962.
JD077831 - Sequence 58855 from Patent EP1572962.
JD219478 - Sequence 200502 from Patent EP1572962.
JD105473 - Sequence 86497 from Patent EP1572962.
JD386550 - Sequence 367574 from Patent EP1572962.
JD116729 - Sequence 97753 from Patent EP1572962.
JD377702 - Sequence 358726 from Patent EP1572962.
JD377703 - Sequence 358727 from Patent EP1572962.
JD276137 - Sequence 257161 from Patent EP1572962.
JD276138 - Sequence 257162 from Patent EP1572962.
JD385606 - Sequence 366630 from Patent EP1572962.
JD110324 - Sequence 91348 from Patent EP1572962.
JD044598 - Sequence 25622 from Patent EP1572962.
JD531738 - Sequence 512762 from Patent EP1572962.
JD471598 - Sequence 452622 from Patent EP1572962.
JD329463 - Sequence 310487 from Patent EP1572962.
JD439928 - Sequence 420952 from Patent EP1572962.
JD319168 - Sequence 300192 from Patent EP1572962.
JD312913 - Sequence 293937 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00983 - Drug metabolism - other enzymes

-  Other Names for This Gene
  Alternate Gene Symbols: NM_198061, NP_932327, Q4G0E9, Q4G0E9_HUMAN
UCSC ID: uc002eqq.3
RefSeq Accession: NM_198061
Protein: Q4G0E9 CCDS: CCDS10825.1, CCDS45507.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_198061.2
exon count: 12CDS single in 3' UTR: no RNA size: 3907
ORF size: 1824CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3052.00frame shift in genome: no % Coverage: 99.56
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.