Human Gene CCDC144A (uc002gqk.1)
Description: Homo sapiens coiled-coil domain containing 144A (CCDC144A), mRNA.
Transcript (Including UTRs)
Position: hg19 chr17:16,593,639-16,678,311 Size: 84,673 Total Exon Count: 18 Strand: +
Coding Region
Position: hg19 chr17:16,593,715-16,676,843 Size: 83,129 Coding Exon Count: 18
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: C144A_HUMAN
DESCRIPTION: RecName: Full=Coiled-coil domain-containing protein 144A;
SIMILARITY: Belongs to the CCDC144 family.SEQUENCE CAUTION: Sequence=BAA25491.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAA25491.2; Type=Frameshift; Positions=1322; Sequence=BAC86369.1; Type=Frameshift; Positions=953;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR021885 - DUF3496
Pfam Domains: PF12001 - Domain of unknown function (DUF3496)
PF14915 - CCDC144C protein coiled-coil region
ModBase Predicted Comparative 3D Structure on A2RUR9
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
EF553518 - Homo sapiens clone DKFZp686C09108 hypothetical protein FLJ36492 (FLJ36492) mRNA, complete cds.BC133019 - Homo sapiens coiled-coil domain containing 144A, mRNA (cDNA clone MGC:164650 IMAGE:40147041), complete cds.BC144224 - Homo sapiens coiled-coil domain containing 144A, mRNA (cDNA clone MGC:177761 IMAGE:9052744), complete cds.BC144225 - Homo sapiens coiled-coil domain containing 144A, mRNA (cDNA clone MGC:177762 IMAGE:9052745), complete cds.AK125971 - Homo sapiens cDNA FLJ43983 fis, clone TESTI4018881.AB011137 - Homo sapiens mRNA for KIAA0565 protein, partial cds.BC034617 - Homo sapiens cDNA clone IMAGE:4837395.JD059507 - Sequence 40531 from Patent EP1572962.DQ575722 - Homo sapiens piRNA piR-43834, complete sequence.JD557621 - Sequence 538645 from Patent EP1572962.JD428938 - Sequence 409962 from Patent EP1572962.JD538966 - Sequence 519990 from Patent EP1572962.JD090989 - Sequence 72013 from Patent EP1572962.DQ578924 - Homo sapiens piRNA piR-47036, complete sequence.DQ590889 - Homo sapiens piRNA piR-58001, complete sequence.DQ600010 - Homo sapiens piRNA piR-38076, complete sequence.DQ596943 - Homo sapiens piRNA piR-35009, complete sequence.DQ595220 - Homo sapiens piRNA piR-61332, complete sequence.JD302624 - Sequence 283648 from Patent EP1572962.JD235802 - Sequence 216826 from Patent EP1572962.JD296608 - Sequence 277632 from Patent EP1572962.JD102379 - Sequence 83403 from Patent EP1572962.JD239286 - Sequence 220310 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A2RUR9, C144A_HUMAN, KIAA0565, NM_014695, NP_055510, O60311, Q6ZU57UCSC ID: uc002gqk.1RefSeq Accession: NM_014695
Protein: A2RUR9
(aka C144A_HUMAN)
CCDS: CCDS45621.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_014695.1
exon count:
18 CDS single in 3' UTR:
no
RNA size:
5828
ORF size:
4284 CDS single in intron:
no
Alignment % ID:
99.98
txCdsPredict score:
7948.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
715 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.