Human Gene ANKRD13B (uc002hej.3)
  Description: Homo sapiens ankyrin repeat domain 13B (ANKRD13B), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr17:27,920,527-27,941,779 Size: 21,253 Total Exon Count: 16 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:27,920,527-27,941,779)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblEntrez GeneExonPrimerGeneNetworkH-INV
HGNCLynxOMIMPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.49 RPKM in Brain - Cerebellum
Total median expression: 345.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF209201 - JP 2014500723-A/16704: Polycomb-Associated Non-Coding RNAs.
BC062597 - Homo sapiens ankyrin repeat domain 13B, mRNA (cDNA clone IMAGE:5247577), partial cds.
MA444778 - JP 2018138019-A/16704: Polycomb-Associated Non-Coding RNAs.
LF212411 - JP 2014500723-A/19914: Polycomb-Associated Non-Coding RNAs.
AK092673 - Homo sapiens cDNA FLJ35354 fis, clone PUAEN2000080, highly similar to Ankyrin repeat domain-containing protein 13B.
AX747664 - Sequence 1189 from Patent EP1308459.
AK097716 - Homo sapiens cDNA FLJ40397 fis, clone TESTI2037002.
AK098421 - Homo sapiens cDNA FLJ25555 fis, clone JTH02535.
AK000425 - Homo sapiens cDNA FLJ20418 fis, clone KAT02427.
JD405126 - Sequence 386150 from Patent EP1572962.
JD535147 - Sequence 516171 from Patent EP1572962.
JD157952 - Sequence 138976 from Patent EP1572962.
JD229533 - Sequence 210557 from Patent EP1572962.
JD225181 - Sequence 206205 from Patent EP1572962.
JD110791 - Sequence 91815 from Patent EP1572962.
JD329317 - Sequence 310341 from Patent EP1572962.
JD151783 - Sequence 132807 from Patent EP1572962.
JD115566 - Sequence 96590 from Patent EP1572962.
JD257931 - Sequence 238955 from Patent EP1572962.
JD503644 - Sequence 484668 from Patent EP1572962.
JD128348 - Sequence 109372 from Patent EP1572962.
JD080951 - Sequence 61975 from Patent EP1572962.
JD214849 - Sequence 195873 from Patent EP1572962.
MA447988 - JP 2018138019-A/19914: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: BC032554, NM_152345
UCSC ID: uc002hej.3
RefSeq Accession: NM_152345

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: BC032554.1
exon count: 16CDS single in 3' UTR: no RNA size: 2694
ORF size: 0CDS single in intron: no Alignment % ID: 99.92
txCdsPredict score: 3548.00frame shift in genome: no % Coverage: 97.62
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.