Human Gene G6PC3 (uc002iey.3)
  Description: Homo sapiens glucose 6 phosphatase, catalytic, 3 (G6PC3), transcript variant 3, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr17:42,148,098-42,153,712 Size: 5,615 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr17:42,152,098-42,153,411 Size: 1,314 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:42,148,098-42,153,712)mRNA (may differ from genome)Protein (221 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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PubMedReactomeTreefamUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: G6PC3_HUMAN
DESCRIPTION: RecName: Full=Glucose-6-phosphatase 3; Short=G-6-Pase 3; Short=G6Pase 3; EC=3.1.3.9; AltName: Full=Glucose-6-phosphatase beta; Short=G6Pase-beta; AltName: Full=Ubiquitous glucose-6-phosphatase catalytic subunit-related protein;
FUNCTION: Hydrolyzes glucose-6-phosphate to glucose in the endoplasmic reticulum. May form with the glucose-6-phosphate transporter (SLC37A4/G6PT) a ubiquitously expressed complex responsible for glucose production through glycogenolysis and gluconeogenesis. Probably required for normal neutrophil function.
CATALYTIC ACTIVITY: D-glucose 6-phosphate + H(2)O = D-glucose + phosphate.
ENZYME REGULATION: Inhibited by vanadate.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=1.0 mM for glucose-6-phosphate (at pH 5.5); KM=2.0 mM for glucose-6-phosphate (at pH 6.5); Note=8 times less active compared to G6PC under the same experimental conditions;
PATHWAY: Carbohydrate biosynthesis; gluconeogenesis.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Ubiquitously expressed. Highly expressed in skeletal muscle, at intermediate levels in heart, brain, placenta, kidney, colon, thymus, spleen and pancreas. Also detected in testis, prostate, ovary, liver, lung, small intestine and peripheral blood lymphocytes.
DISEASE: Defects in G6PC3 are the cause of neutropenia severe congenital autosomal recessive type 4 (SCN4) [MIM:612541]. Autosomal recessive SCN constitutes a primary immunodeficiency syndrome associated with increased apoptosis in myeloid cells. Individuals show a paucity of mature neutrophils in peripheral blood and bone marrow and develop life-threatening bacterial infections. SCN4 is a severe congenital neutropenia syndrome associated with cardiac and urogenital malformations.
DISEASE: Defects in G6PC3 are the cause of Dursun syndrome (DURSS) [MIM:612541]. A disease characterized by pulmonary arterial hypertension, cardiac abnormalities including secundum-type atrial septal defect, intermittent neutropenia, lymphopenia, monocytosis and anemia.
SIMILARITY: Belongs to the glucose-6-phosphatase family.
CAUTION: According to PubMed:12370122, it has no hydrolytic activity.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: G6PC3
Diseases sorted by gene-association score: neutropenia, severe congenital 4, autosomal recessive* (1331), neutropenia (23), g6pc3 deficiency (19), lymphopenia (18), severe congenital neutropenia (14), poikiloderma with neutropenia (7), fructose-1,6-bisphosphatase deficiency (5), myotonia (5), chronic pulmonary heart disease (4), leukocyte disease (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 50.76 RPKM in Pituitary
Total median expression: 1193.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -368.05805-0.457 Picture PostScript Text
3' UTR -83.60301-0.278 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016275 - Glucose-6-phosphatase
IPR016118 - P_Acid_Pase/Cl_peroxidase_N
IPR000326 - P_Acid_Pase_2/haloperoxidase

Pfam Domains:
PF01569 - PAP2 superfamily

SCOP Domains:
48317 - Acid phosphatase/Vanadium-dependent haloperoxidase

ModBase Predicted Comparative 3D Structure on Q9BUM1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004346 glucose-6-phosphatase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006094 gluconeogenesis
GO:0006796 phosphate-containing compound metabolic process
GO:0015760 glucose-6-phosphate transport
GO:0016311 dephosphorylation
GO:0051156 glucose 6-phosphate metabolic process

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030176 integral component of endoplasmic reticulum membrane


-  Descriptions from all associated GenBank mRNAs
  LF209368 - JP 2014500723-A/16871: Polycomb-Associated Non-Coding RNAs.
BC021574 - Homo sapiens glucose 6 phosphatase, catalytic, 3, mRNA (cDNA clone MGC:31975 IMAGE:4842511), complete cds.
JD461154 - Sequence 442178 from Patent EP1572962.
JD339986 - Sequence 321010 from Patent EP1572962.
JD431498 - Sequence 412522 from Patent EP1572962.
JD273038 - Sequence 254062 from Patent EP1572962.
JD195839 - Sequence 176863 from Patent EP1572962.
BC062596 - Homo sapiens glucose 6 phosphatase, catalytic, 3, mRNA (cDNA clone IMAGE:5247017), partial cds.
AK091417 - Homo sapiens cDNA FLJ34098 fis, clone FCBBF3007453.
AX746969 - Sequence 494 from Patent EP1308459.
BC002494 - Homo sapiens glucose 6 phosphatase, catalytic, 3, mRNA (cDNA clone MGC:2573 IMAGE:3050476), complete cds.
JD361437 - Sequence 342461 from Patent EP1572962.
KJ895188 - Synthetic construct Homo sapiens clone ccsbBroadEn_04582 G6PC3 gene, encodes complete protein.
KR710591 - Synthetic construct Homo sapiens clone CCSBHm_00014171 G6PC3 (G6PC3) mRNA, encodes complete protein.
KR710592 - Synthetic construct Homo sapiens clone CCSBHm_00014172 G6PC3 (G6PC3) mRNA, encodes complete protein.
KR710593 - Synthetic construct Homo sapiens clone CCSBHm_00014173 G6PC3 (G6PC3) mRNA, encodes complete protein.
KR710594 - Synthetic construct Homo sapiens clone CCSBHm_00014174 G6PC3 (G6PC3) mRNA, encodes complete protein.
LF328028 - JP 2014500723-A/135531: Polycomb-Associated Non-Coding RNAs.
LF328030 - JP 2014500723-A/135533: Polycomb-Associated Non-Coding RNAs.
LF328032 - JP 2014500723-A/135535: Polycomb-Associated Non-Coding RNAs.
DQ601284 - Homo sapiens piRNA piR-39350, complete sequence.
LF328033 - JP 2014500723-A/135536: Polycomb-Associated Non-Coding RNAs.
LF328034 - JP 2014500723-A/135537: Polycomb-Associated Non-Coding RNAs.
LF328035 - JP 2014500723-A/135538: Polycomb-Associated Non-Coding RNAs.
JD556850 - Sequence 537874 from Patent EP1572962.
JD230614 - Sequence 211638 from Patent EP1572962.
JD548903 - Sequence 529927 from Patent EP1572962.
JD495376 - Sequence 476400 from Patent EP1572962.
JD335856 - Sequence 316880 from Patent EP1572962.
JD225576 - Sequence 206600 from Patent EP1572962.
JD360838 - Sequence 341862 from Patent EP1572962.
MA563605 - JP 2018138019-A/135531: Polycomb-Associated Non-Coding RNAs.
MA563607 - JP 2018138019-A/135533: Polycomb-Associated Non-Coding RNAs.
MA563609 - JP 2018138019-A/135535: Polycomb-Associated Non-Coding RNAs.
MA563610 - JP 2018138019-A/135536: Polycomb-Associated Non-Coding RNAs.
MA563611 - JP 2018138019-A/135537: Polycomb-Associated Non-Coding RNAs.
MA563612 - JP 2018138019-A/135538: Polycomb-Associated Non-Coding RNAs.
MA444945 - JP 2018138019-A/16871: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BUM1 (Reactome details) participates in the following event(s):

R-HSA-3262512 G6PC3 hydrolyzes glucose 6-phosphate to form glucose and orthophosphate (ubiquitous)
R-HSA-70263 Gluconeogenesis
R-HSA-70326 Glucose metabolism
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: G6PC3_HUMAN, NR_028581, Q8WU15, Q9BUM1, UGRP
UCSC ID: uc002iey.3
RefSeq Accession: NR_028581
Protein: Q9BUM1 (aka G6PC3_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene G6PC3:
g6pc3-def (G6PC3 Deficiency)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_028581.1
exon count: 7CDS single in 3' UTR: no RNA size: 1848
ORF size: 666CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1192.00frame shift in genome: no % Coverage: 95.89
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.