Human Gene CEP95 (uc002jeo.1)
  Description: Homo sapiens centrosomal protein 95kDa (CEP95), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr17:62,528,957-62,532,633 Size: 3,677 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr17:62,528,989-62,530,933 Size: 1,945 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:62,528,957-62,532,633)mRNA (may differ from genome)Protein (147 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneCardsGeneNetworkH-INVHGNC
LynxMGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.91 RPKM in Ovary
Total median expression: 554.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -1.0032-0.031 Picture PostScript Text
3' UTR -500.951700-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK057326 - Homo sapiens cDNA FLJ32764 fis, clone TESTI2001829.
AK290587 - Homo sapiens cDNA FLJ76049 complete cds.
AK297409 - Homo sapiens cDNA FLJ54025 complete cds, highly similar to Coiled-coil domain-containing protein 45.
BC009518 - Homo sapiens coiled-coil domain containing 45, mRNA (cDNA clone MGC:10965 IMAGE:3633884), complete cds.
AL832822 - Homo sapiens mRNA; cDNA DKFZp667E1824 (from clone DKFZp667E1824).
KJ895136 - Synthetic construct Homo sapiens clone ccsbBroadEn_04530 CEP95 gene, encodes complete protein.
AF130069 - Homo sapiens clone FLB8436 PRO2277 mRNA, complete cds.
BX641136 - Homo sapiens mRNA; cDNA DKFZp686H24132 (from clone DKFZp686H24132).
BC029461 - Homo sapiens coiled-coil domain containing 45, mRNA (cDNA clone IMAGE:4663179), with apparent retained intron.

-  Other Names for This Gene
  Alternate Gene Symbols: AF130069
UCSC ID: uc002jeo.1
RefSeq Accession: NM_138363

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AF130069.2
exon count: 3CDS single in 3' UTR: no RNA size: 2039
ORF size: 444CDS single in intron: no Alignment % ID: 99.95
txCdsPredict score: 988.00frame shift in genome: no % Coverage: 99.41
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.