Human Gene RP11-552F3.12 (uc002jqa.1)
  Description: Homo sapiens Fas (TNFRSF6) binding factor 1 (RP11-552F3.12), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr17:73,894,724-73,926,210 Size: 31,487 Total Exon Count: 32 Strand: -


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:73,894,724-73,926,210)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AB058766 - Homo sapiens mRNA for KIAA1863 protein, partial cds.
BC023549 - Homo sapiens Fas (TNFRSF6) binding factor 1, mRNA (cDNA clone MGC:16590 IMAGE:4109753), complete cds.
AK074045 - Homo sapiens mRNA for FLJ00103 protein.
AB354594 - Homo sapiens mRNA for Albatross, complete cds.
CU692796 - Synthetic construct Homo sapiens gateway clone IMAGE:100022018 5' read FBF1 mRNA.
AF161380 - Homo sapiens HSPC262 mRNA, partial cds.
BC013311 - Homo sapiens mitochondrial ribosomal protein L38, mRNA (cDNA clone MGC:4810 IMAGE:3546083), complete cds.
AK024058 - Homo sapiens cDNA FLJ13996 fis, clone Y79AA1002211, highly similar to Homo sapiens mitochondrial ribosomal protein L38 (MRPL38), nuclear gene encoding mitochondrial protein, mRNA.
AK313283 - Homo sapiens cDNA, FLJ93795, Homo sapiens mitochondrial ribosomal protein L38 (MRPL38), nucleargene encoding mitochondrial protein, mRNA.
HQ447208 - Synthetic construct Homo sapiens clone IMAGE:100070507; CCSB006124_01 mitochondrial ribosomal protein L38 (MRPL38) gene, encodes complete protein.
KJ903112 - Synthetic construct Homo sapiens clone ccsbBroadEn_12506 MRPL38 gene, encodes complete protein.
BC034460 - Homo sapiens mitochondrial ribosomal protein L38, mRNA (cDNA clone IMAGE:5182345).
BC007570 - Homo sapiens Fas (TNFRSF6) binding factor 1, mRNA (cDNA clone IMAGE:3029289), partial cds.
AK057261 - Homo sapiens cDNA FLJ32699 fis, clone TESTI2000435, weakly similar to CALDESMON.
BC012332 - Homo sapiens Fas (TNFRSF6) binding factor 1, mRNA (cDNA clone IMAGE:4562904), partial cds.
KJ904933 - Synthetic construct Homo sapiens clone ccsbBroadEn_14327 FBF1 gene, encodes complete protein.
JD274976 - Sequence 256000 from Patent EP1572962.
JD539814 - Sequence 520838 from Patent EP1572962.
JD422182 - Sequence 403206 from Patent EP1572962.
JD260461 - Sequence 241485 from Patent EP1572962.
JD176968 - Sequence 157992 from Patent EP1572962.
JD339877 - Sequence 320901 from Patent EP1572962.
JD461753 - Sequence 442777 from Patent EP1572962.
JD470802 - Sequence 451826 from Patent EP1572962.
JD393067 - Sequence 374091 from Patent EP1572962.
JD064164 - Sequence 45188 from Patent EP1572962.
JD466017 - Sequence 447041 from Patent EP1572962.
JD068495 - Sequence 49519 from Patent EP1572962.
JD178054 - Sequence 159078 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AB058766, FBF1
UCSC ID: uc002jqa.1
RefSeq Accession: NM_001080542

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AB058766.1
exon count: 32CDS single in 3' UTR: no RNA size: 4270
ORF size: 0CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: 2380.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 82# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.