Human Gene TRAPPC8 (uc002kxd.4)
  Description: Homo sapiens trafficking protein particle complex 8 (TRAPPC8), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr18:29,409,136-29,523,099 Size: 113,964 Total Exon Count: 30 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:29,409,136-29,523,099)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMedTreefamWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.09 RPKM in Testis
Total median expression: 310.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AL136749 - Homo sapiens mRNA; cDNA DKFZp434D0814 (from clone DKFZp434D0814).
AB023229 - Homo sapiens KIAA1012 mRNA for KIAA1012 protein.
BC127109 - Homo sapiens KIAA1012, mRNA (cDNA clone MGC:150696 IMAGE:40124744), complete cds.
BC127110 - Homo sapiens KIAA1012, mRNA (cDNA clone MGC:150697 IMAGE:40124745), complete cds.
KJ902246 - Synthetic construct Homo sapiens clone ccsbBroadEn_11640 TRAPPC8 gene, encodes complete protein.
AB384553 - Synthetic construct DNA, clone: pF1KA1012, Homo sapiens KIAA1012 gene for KIAA1012 protein, complete cds, without stop codon, in Flexi system.
AK292537 - Homo sapiens cDNA FLJ78765 partial cds.
BC059380 - Homo sapiens KIAA1012, mRNA (cDNA clone IMAGE:30347572), complete cds.
JF432413 - Synthetic construct Homo sapiens clone IMAGE:100073618 KIAA1012 (KIAA1012) gene, encodes complete protein.
KJ902245 - Synthetic construct Homo sapiens clone ccsbBroadEn_11639 TRAPPC8 gene, encodes complete protein.
CU691358 - Synthetic construct Homo sapiens gateway clone IMAGE:100021229 5' read KIAA1012 mRNA.
AK001662 - Homo sapiens cDNA FLJ10800 fis, clone NT2RP4000739, highly similar to Protein TRS85 homolog.
JD294910 - Sequence 275934 from Patent EP1572962.
JD286260 - Sequence 267284 from Patent EP1572962.
JD258987 - Sequence 240011 from Patent EP1572962.
JD344634 - Sequence 325658 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AL136749
UCSC ID: uc002kxd.4
RefSeq Accession: NM_014939

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AL136749.1
exon count: 30CDS single in 3' UTR: no RNA size: 5130
ORF size: 0CDS single in intron: no Alignment % ID: 99.94
txCdsPredict score: 5155.00frame shift in genome: no % Coverage: 97.70
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.