Human Gene TRAPPC8 (uc002kxd.4)
|
|
Sequence and Links to Tools and Databases
|
|
Primer design for this transcript
|
|
Comparative Toxicogenomics Database (CTD)
|
|
The following chemicals interact with this gene
| |
|
|
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
|
|
Microarray Expression Data
|
|
Press "+" in the title bar above to open this section.
| |
|
|
Orthologous Genes in Other Species
|
|
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
| | | | | |
| | | | | |
| | | | | |
| | | | | |
| | | | | |
|
| |
|
|
Descriptions from all associated GenBank mRNAs
|
|
AL136749 - Homo sapiens mRNA; cDNA DKFZp434D0814 (from clone DKFZp434D0814). AB023229 - Homo sapiens KIAA1012 mRNA for KIAA1012 protein. BC127109 - Homo sapiens KIAA1012, mRNA (cDNA clone MGC:150696 IMAGE:40124744), complete cds. BC127110 - Homo sapiens KIAA1012, mRNA (cDNA clone MGC:150697 IMAGE:40124745), complete cds. KJ902246 - Synthetic construct Homo sapiens clone ccsbBroadEn_11640 TRAPPC8 gene, encodes complete protein. AB384553 - Synthetic construct DNA, clone: pF1KA1012, Homo sapiens KIAA1012 gene for KIAA1012 protein, complete cds, without stop codon, in Flexi system. AK292537 - Homo sapiens cDNA FLJ78765 partial cds. BC059380 - Homo sapiens KIAA1012, mRNA (cDNA clone IMAGE:30347572), complete cds. JF432413 - Synthetic construct Homo sapiens clone IMAGE:100073618 KIAA1012 (KIAA1012) gene, encodes complete protein. KJ902245 - Synthetic construct Homo sapiens clone ccsbBroadEn_11639 TRAPPC8 gene, encodes complete protein. CU691358 - Synthetic construct Homo sapiens gateway clone IMAGE:100021229 5' read KIAA1012 mRNA. AK001662 - Homo sapiens cDNA FLJ10800 fis, clone NT2RP4000739, highly similar to Protein TRS85 homolog. JD294910 - Sequence 275934 from Patent EP1572962. JD286260 - Sequence 267284 from Patent EP1572962. JD258987 - Sequence 240011 from Patent EP1572962. JD344634 - Sequence 325658 from Patent EP1572962.
| |
|
|
Other Names for This Gene
|
|
Alternate Gene Symbols: AL136749 UCSC ID: uc002kxd.4 RefSeq Accession: NM_014939
| |
|
|
Gene Model Information
|
|
category:
| nearCoding
| nonsense-mediated-decay:
| yes
| RNA accession:
| AL136749.1
|
exon count:
| 30 | CDS single in 3' UTR:
| no
| RNA size:
| 5130 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.94 |
txCdsPredict score:
| 5155.00 | frame shift in genome:
| no
| % Coverage:
| 97.70 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
|
Click here
for a detailed description of the fields of the table above.
| |
|
|
Methods, Credits, and Use Restrictions
|
|
Click here
for details on how this gene model was made and data restrictions if any.
| |
|
|
|