Human Gene ATP9B (uc002lmy.1)
  Description: Homo sapiens ATPase, class II, type 9B (ATP9B), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr18:76,847,307-77,037,268 Size: 189,962 Total Exon Count: 14 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:76,847,307-77,037,268)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVHGNCLynx
PubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.81 RPKM in Testis
Total median expression: 159.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC036473 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone IMAGE:5259227), with apparent retained intron.
AK308291 - Homo sapiens cDNA, FLJ98239.
BC022535 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone IMAGE:4816928), with apparent retained intron.
BC125220 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone MGC:150651 IMAGE:40123959), complete cds.
BC125219 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone MGC:150650 IMAGE:40123958), complete cds.
LF385265 - JP 2014500723-A/192768: Polycomb-Associated Non-Coding RNAs.
AK093704 - Homo sapiens cDNA FLJ36385 fis, clone THYMU2008727, highly similar to Probable phospholipid-transporting ATPase IIB (EC 3.6.3.1).
AX748269 - Sequence 1794 from Patent EP1308459.
AK097757 - Homo sapiens cDNA FLJ40438 fis, clone TESTI2039776, highly similar to POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE IIB (EC 3.6.1.-).
AB373110 - Homo sapiens hMMR1 mRNA for macrophage MHC receptor 1, complete cds.
BX537860 - Homo sapiens mRNA; cDNA DKFZp686H2093 (from clone DKFZp686H2093).
BX648948 - Homo sapiens mRNA; cDNA DKFZp686F0648 (from clone DKFZp686F0648).
MA620842 - JP 2018138019-A/192768: Polycomb-Associated Non-Coding RNAs.
AK295981 - Homo sapiens cDNA FLJ61123 complete cds, highly similar to Homo sapiens ATPase, Class II, type 9B (ATP9B), mRNA.
BC053561 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone IMAGE:6164343), complete cds.
CU690988 - Synthetic construct Homo sapiens gateway clone IMAGE:100021508 5' read ATP9B mRNA.
KJ906492 - Synthetic construct Homo sapiens clone ccsbBroadEn_16162 ATP9B gene, encodes complete protein.
LF344095 - JP 2014500723-A/151598: Polycomb-Associated Non-Coding RNAs.
LF344093 - JP 2014500723-A/151596: Polycomb-Associated Non-Coding RNAs.
LF344087 - JP 2014500723-A/151590: Polycomb-Associated Non-Coding RNAs.
MA579672 - JP 2018138019-A/151598: Polycomb-Associated Non-Coding RNAs.
MA579670 - JP 2018138019-A/151596: Polycomb-Associated Non-Coding RNAs.
MA579664 - JP 2018138019-A/151590: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK097757
UCSC ID: uc002lmy.1
RefSeq Accession: NM_198531

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK097757.1
exon count: 14CDS single in 3' UTR: no RNA size: 1923
ORF size: 0CDS single in intron: no Alignment % ID: 99.84
txCdsPredict score: 1119.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 72# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.