Human Gene ATP9B (uc002lmy.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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BC036473 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone IMAGE:5259227), with apparent retained intron. AK308291 - Homo sapiens cDNA, FLJ98239. BC022535 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone IMAGE:4816928), with apparent retained intron. BC125220 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone MGC:150651 IMAGE:40123959), complete cds. BC125219 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone MGC:150650 IMAGE:40123958), complete cds. LF385265 - JP 2014500723-A/192768: Polycomb-Associated Non-Coding RNAs. AK093704 - Homo sapiens cDNA FLJ36385 fis, clone THYMU2008727, highly similar to Probable phospholipid-transporting ATPase IIB (EC 3.6.3.1). AX748269 - Sequence 1794 from Patent EP1308459. AK097757 - Homo sapiens cDNA FLJ40438 fis, clone TESTI2039776, highly similar to POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE IIB (EC 3.6.1.-). AB373110 - Homo sapiens hMMR1 mRNA for macrophage MHC receptor 1, complete cds. BX537860 - Homo sapiens mRNA; cDNA DKFZp686H2093 (from clone DKFZp686H2093). BX648948 - Homo sapiens mRNA; cDNA DKFZp686F0648 (from clone DKFZp686F0648). MA620842 - JP 2018138019-A/192768: Polycomb-Associated Non-Coding RNAs. AK295981 - Homo sapiens cDNA FLJ61123 complete cds, highly similar to Homo sapiens ATPase, Class II, type 9B (ATP9B), mRNA. BC053561 - Homo sapiens ATPase, class II, type 9B, mRNA (cDNA clone IMAGE:6164343), complete cds. CU690988 - Synthetic construct Homo sapiens gateway clone IMAGE:100021508 5' read ATP9B mRNA. KJ906492 - Synthetic construct Homo sapiens clone ccsbBroadEn_16162 ATP9B gene, encodes complete protein. LF344095 - JP 2014500723-A/151598: Polycomb-Associated Non-Coding RNAs. LF344093 - JP 2014500723-A/151596: Polycomb-Associated Non-Coding RNAs. LF344087 - JP 2014500723-A/151590: Polycomb-Associated Non-Coding RNAs. MA579672 - JP 2018138019-A/151598: Polycomb-Associated Non-Coding RNAs. MA579670 - JP 2018138019-A/151596: Polycomb-Associated Non-Coding RNAs. MA579664 - JP 2018138019-A/151590: Polycomb-Associated Non-Coding RNAs.
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Other Names for This Gene
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Alternate Gene Symbols: AK097757 UCSC ID: uc002lmy.1 RefSeq Accession: NM_198531
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Gene Model Information
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category:
| nearCoding
| nonsense-mediated-decay:
| yes
| RNA accession:
| AK097757.1
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exon count:
| 14 | CDS single in 3' UTR:
| no
| RNA size:
| 1923 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.84 |
txCdsPredict score:
| 1119.50 | frame shift in genome:
| no
| % Coverage:
| 100.00 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 72 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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