Human Gene KEAP1 (uc002mor.1)
  Description: Homo sapiens kelch-like ECH-associated protein 1 (KEAP1), transcript variant 1, mRNA.
RefSeq Summary (NM_203500): This gene encodes a protein containing KELCH-1 like domains, as well as a BTB/POZ domain. Kelch-like ECH-associated protein 1 interacts with NF-E2-related factor 2 in a redox-sensitive manner and the dissociation of the proteins in the cytoplasm is followed by transportation of NF-E2-related factor 2 to the nucleus. This interaction results in the expression of the catalytic subunit of gamma-glutamylcysteine synthetase. Two alternatively spliced transcript variants encoding the same isoform have been found for this gene. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr19:10,596,796-10,614,054 Size: 17,259 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr19:10,597,328-10,610,709 Size: 13,382 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:10,596,796-10,614,054)mRNA (may differ from genome)Protein (624 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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neXtProtOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KEAP1_HUMAN
DESCRIPTION: RecName: Full=Kelch-like ECH-associated protein 1; AltName: Full=Cytosolic inhibitor of Nrf2; Short=INrf2; AltName: Full=Kelch-like protein 19;
FUNCTION: Retains NFE2L2/NRF2 in the cytosol. Functions as substrate adapter protein for the E3 ubiquitin ligase complex formed by CUL3 and RBX1. Targets NFE2L2/NRF2 for ubiquitination and degradation by the proteasome, thus resulting in the suppression of its transcriptional activity and the repression of antioxidant response element-mediated detoxifying enzyme gene expression. May also retain BPTF in the cytosol. Targets PGAM5 for ubiquitination and degradation by the proteasome.
ENZYME REGULATION: Ubiquitination and subsequent degradation of PGAM5 is inhibited by oxidative stress and sulforaphane.
SUBUNIT: Homodimer. Forms a ternary complex with NFE2L2 and PGAM5. Interacts with the N-terminal regulatory domain of NFE2L2/NRF2. Interacts with BPTF and PTMA. Interacts with CUL3. Part of a complex that contains KEAP1, CUL3 and RBX1. Interacts with NFE2L1.
INTERACTION: O14920:IKBKB; NbExp=6; IntAct=EBI-751001, EBI-81266; O88351:Ikbkb (xeno); NbExp=2; IntAct=EBI-751001, EBI-447960; P15314:Irf1 (xeno); NbExp=2; IntAct=EBI-751001, EBI-6115486; Q04206:RELA; NbExp=4; IntAct=EBI-751001, EBI-73886; Q13501:SQSTM1; NbExp=8; IntAct=EBI-751001, EBI-307104; Q64337:Sqstm1 (xeno); NbExp=2; IntAct=EBI-751001, EBI-645025; Q9Y3Q8:TSC22D4; NbExp=3; IntAct=EBI-751001, EBI-739485;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Shuttles between cytoplasm and nucleus.
TISSUE SPECIFICITY: Broadly expressed, with highest levels in skeletal muscle.
DOMAIN: The Kelch repeats mediate interaction with NF2L2/NRF2, BPTF and PGAM5.
PTM: Ubiquitinated and subject to proteasomal degradation.
SIMILARITY: Contains 1 BACK (BTB/Kelch associated) domain.
SIMILARITY: Contains 1 BTB (POZ) domain.
SIMILARITY: Contains 6 Kelch repeats.
SEQUENCE CAUTION: Sequence=BAA09481.3; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): KEAP1
CDC HuGE Published Literature: KEAP1

-  MalaCards Disease Associations
  MalaCards Gene Search: KEAP1
Diseases sorted by gene-association score: goiter, multinodular 1, with or without sertoli-leydig cell tumors* (247), lung papillary adenocarcinoma (10), deafness, autosomal recessive 68 (8), lung squamous cell carcinoma (7), adhesions of uterus (5), papillary adenocarcinoma (5), microphthalmia, isolated 1 (4), adamantinoma of long bones (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.81 RPKM in Muscle - Skeletal
Total median expression: 863.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.20185-0.342 Picture PostScript Text
3' UTR -198.30532-0.373 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011705 - BACK
IPR000210 - BTB/POZ-like
IPR011333 - BTB/POZ_fold
IPR013069 - BTB_POZ
IPR017096 - Kelch-like_gigaxonin
IPR015915 - Kelch-typ_b-propeller
IPR006652 - Kelch_1

Pfam Domains:
PF00651 - BTB/POZ domain
PF01344 - Kelch motif
PF07646 - Kelch motif
PF07707 - BTB And C-terminal Kelch
PF13415 - Galactose oxidase, central domain
PF13418 - Galactose oxidase, central domain
PF13964 - Kelch motif

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
63825 - YWTD domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50993 - Prolyl oligopeptidase, N-terminal domain
54695 - POZ domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1U6D - X-ray MuPIT 1ZGK - X-ray MuPIT 2FLU - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q14145
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsemblFlyBase  
 Protein SequenceProtein SequenceProtein Sequence  
 AlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0097718 disordered domain specific binding
GO:0004842 ubiquitin-protein transferase activity

Biological Process:
GO:0001701 in utero embryonic development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0010499 proteasomal ubiquitin-independent protein catabolic process
GO:0016567 protein ubiquitination
GO:0016579 protein deubiquitination
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042994 cytoplasmic sequestering of transcription factor
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043687 post-translational protein modification
GO:0045604 regulation of epidermal cell differentiation
GO:0071353 cellular response to interleukin-4

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005884 actin filament
GO:0030496 midbody
GO:0031463 Cul3-RING ubiquitin ligase complex
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  BC015945 - Homo sapiens kelch-like ECH-associated protein 1, mRNA (cDNA clone MGC:9454 IMAGE:3910857), complete cds.
HV708927 - JP 2012506450-A/25: Methods for treating eye disorders.
HW061202 - JP 2012529430-A/77: METHODS FOR TREATING CHRONIC KIDNEY DISEASE.
JA482157 - Sequence 140 from Patent WO2011072091.
JB252010 - Sequence 77 from Patent EP2440214.
JE980449 - Sequence 140 from Patent EP2862929.
LP764909 - Sequence 77 from Patent EP3276004.
MG770405 - Homo sapiens KEAP1 delta C mRNA, complete cds.
HV708926 - JP 2012506450-A/24: Methods for treating eye disorders.
HW061201 - JP 2012529430-A/76: METHODS FOR TREATING CHRONIC KIDNEY DISEASE.
JA482156 - Sequence 139 from Patent WO2011072091.
JB252009 - Sequence 76 from Patent EP2440214.
JE980448 - Sequence 139 from Patent EP2862929.
LP764908 - Sequence 76 from Patent EP3276004.
BC014118 - Homo sapiens kelch-like ECH-associated protein 1, mRNA (cDNA clone IMAGE:4549407), partial cds.
BC002417 - Homo sapiens kelch-like ECH-associated protein 1, mRNA (cDNA clone MGC:1114 IMAGE:3163902), complete cds.
BC002930 - Homo sapiens kelch-like ECH-associated protein 1, mRNA (cDNA clone MGC:10630 IMAGE:3955118), complete cds.
AF361886 - Homo sapiens cytosolic inhibitor of NRF2 (INRF2) mRNA, complete cds.
D50922 - Homo sapiens KIAA0132 mRNA.
AK056204 - Homo sapiens cDNA FLJ31642 fis, clone NT2RI2003738, highly similar to Kelch-like ECH-associated protein 1.
BC003156 - Homo sapiens kelch-like ECH-associated protein 1, mRNA (cDNA clone IMAGE:2906232).
BC021957 - Homo sapiens kelch-like ECH-associated protein 1, mRNA (cDNA clone IMAGE:2906137), partial cds.
JD390748 - Sequence 371772 from Patent EP1572962.
JD484548 - Sequence 465572 from Patent EP1572962.
JD036926 - Sequence 17950 from Patent EP1572962.
JD202855 - Sequence 183879 from Patent EP1572962.
JD077597 - Sequence 58621 from Patent EP1572962.
JD194292 - Sequence 175316 from Patent EP1572962.
JD317582 - Sequence 298606 from Patent EP1572962.
JD401357 - Sequence 382381 from Patent EP1572962.
JD546918 - Sequence 527942 from Patent EP1572962.
JD106410 - Sequence 87434 from Patent EP1572962.
JD354296 - Sequence 335320 from Patent EP1572962.
JD395346 - Sequence 376370 from Patent EP1572962.
JD439126 - Sequence 420150 from Patent EP1572962.
KJ901056 - Synthetic construct Homo sapiens clone ccsbBroadEn_10450 KEAP1 gene, encodes complete protein.
AB383759 - Synthetic construct DNA, clone: pF1KSDA0132, Homo sapiens KEAP1 gene for kelch-like ECH-associated protein 1, complete cds, without stop codon, in Flexi system.
DQ893639 - Synthetic construct clone IMAGE:100006269; FLH185815.01X; RZPDo839F05148D kelch-like ECH-associated protein 1 (KEAP1) gene, encodes complete protein.
DQ895597 - Synthetic construct Homo sapiens clone IMAGE:100010057; FLH185811.01L; RZPDo839F05147D kelch-like ECH-associated protein 1 (KEAP1) gene, encodes complete protein.
EU176209 - Synthetic construct Homo sapiens clone IMAGE:100006547; FLH263515.01X; RZPDo839D05250D kelch-like ECH-associated protein 1 (KEAP1) gene, encodes complete protein.
DL491364 - Novel nucleic acids.
DL489994 - Novel nucleic acids.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04120 - Ubiquitin mediated proteolysis

BioCarta from NCI Cancer Genome Anatomy Project
h_arenrf2Pathway - Oxidative Stress Induced Gene Expression Via Nrf2

Reactome (by CSHL, EBI, and GO)

Protein Q14145 (Reactome details) participates in the following event(s):

R-HSA-6781764 USP15 deubiquitinates SMAD1,SMAD2,SMAD3, SMAD7:SMURF,KEAP1
R-HSA-8955241 CAND1 binds cytosolic CRL E3 ubiquitin ligases
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-8955289 COMMDs displace CAND1 from cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-8956040 COP9 signalosome deneddylates cytosolic CRL E3 ubiquitin ligase complexes
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-5689880 Ub-specific processing proteases
R-HSA-8951664 Neddylation
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-5688426 Deubiquitination
R-HSA-597592 Post-translational protein modification
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-392499 Metabolism of proteins
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B3KPD5, INRF2, KEAP1_HUMAN, KIAA0132, KLHL19, NM_203500, NP_987096, Q14145, Q6LEP0, Q8WTX1, Q9BPY9
UCSC ID: uc002mor.1
RefSeq Accession: NM_203500
Protein: Q14145 (aka KEAP1_HUMAN or KEAP_HUMAN)
CCDS: CCDS12239.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_203500.1
exon count: 6CDS single in 3' UTR: no RNA size: 2606
ORF size: 1875CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3300.00frame shift in genome: no % Coverage: 99.46
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.