Human Gene SIGLEC16 (uc002prf.3)
  Description: Homo sapiens sialic acid binding Ig-like lectin 16 (gene/pseudogene) (SIGLEC16), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr19:50,472,912-50,479,076 Size: 6,165 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:50,472,912-50,479,076)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.98 RPKM in Ovary
Total median expression: 51.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK301031 - Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.
JD394900 - Sequence 375924 from Patent EP1572962.
BC030222 - Homo sapiens sialic acid binding Ig-like lectin 16 (gene/pseudogene), mRNA (cDNA clone IMAGE:5211307), with apparent retained intron.
JD395318 - Sequence 376342 from Patent EP1572962.
JD408037 - Sequence 389061 from Patent EP1572962.
BC039008 - Homo sapiens sialic acid binding Ig-like lectin 16 (gene/pseudogene), mRNA (cDNA clone IMAGE:5590502).
EU330985 - Homo sapiens sialic acid-binding immunoglobulin-like lectin 16 (SIGLEC16) mRNA, complete cds.
JD335215 - Sequence 316239 from Patent EP1572962.
JD163026 - Sequence 144050 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_002825
UCSC ID: uc002prf.3
RefSeq Accession: NR_002825

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: yes RNA accession: NR_002825.1
exon count: 4CDS single in 3' UTR: no RNA size: 1714
ORF size: 0CDS single in intron: no Alignment % ID: 99.94
txCdsPredict score: 658.00frame shift in genome: no % Coverage: 93.87
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 1
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.