Human Gene SIGLEC16 (uc002prf.3)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AK301031 - Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor. JD394900 - Sequence 375924 from Patent EP1572962. BC030222 - Homo sapiens sialic acid binding Ig-like lectin 16 (gene/pseudogene), mRNA (cDNA clone IMAGE:5211307), with apparent retained intron. JD395318 - Sequence 376342 from Patent EP1572962. JD408037 - Sequence 389061 from Patent EP1572962. BC039008 - Homo sapiens sialic acid binding Ig-like lectin 16 (gene/pseudogene), mRNA (cDNA clone IMAGE:5590502). EU330985 - Homo sapiens sialic acid-binding immunoglobulin-like lectin 16 (SIGLEC16) mRNA, complete cds. JD335215 - Sequence 316239 from Patent EP1572962. JD163026 - Sequence 144050 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: NR_002825 UCSC ID: uc002prf.3 RefSeq Accession: NR_002825
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| yes
| RNA accession:
| NR_002825.1
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exon count:
| 4 | CDS single in 3' UTR:
| no
| RNA size:
| 1714 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.94 |
txCdsPredict score:
| 658.00 | frame shift in genome:
| no
| % Coverage:
| 93.87 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 1 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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