Human Gene CTD-2620I22.1 (uc002qan.4)
  Description: Homo sapiens zinc finger protein 702, pseudogene (CTD-2620I22.1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr19:53,471,504-53,496,784 Size: 25,281 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:53,471,504-53,496,784)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVLynxPubMed
Treefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.30 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 15.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AL832505 - Homo sapiens mRNA; cDNA DKFZp686I0252 (from clone DKFZp686I0252).
AK092593 - Homo sapiens cDNA FLJ35274 fis, clone PROST2006030, highly similar to Zinc finger protein 702.
BC032590 - Homo sapiens zinc finger protein 702 pseudogene, mRNA (cDNA clone IMAGE:5502691).
AK023047 - Homo sapiens cDNA FLJ12985 fis, clone NT2RP3000050.
JD155096 - Sequence 136120 from Patent EP1572962.
JD551007 - Sequence 532031 from Patent EP1572962.
JD442261 - Sequence 423285 from Patent EP1572962.
JD558485 - Sequence 539509 from Patent EP1572962.
JD564563 - Sequence 545587 from Patent EP1572962.
JD175692 - Sequence 156716 from Patent EP1572962.
JD096012 - Sequence 77036 from Patent EP1572962.
JD373894 - Sequence 354918 from Patent EP1572962.
JD188715 - Sequence 169739 from Patent EP1572962.
JD167611 - Sequence 148635 from Patent EP1572962.
JD179278 - Sequence 160302 from Patent EP1572962.
JD481187 - Sequence 462211 from Patent EP1572962.
JD502916 - Sequence 483940 from Patent EP1572962.
JD431496 - Sequence 412520 from Patent EP1572962.
JD553696 - Sequence 534720 from Patent EP1572962.
JD249328 - Sequence 230352 from Patent EP1572962.
JD513346 - Sequence 494370 from Patent EP1572962.
JD314816 - Sequence 295840 from Patent EP1572962.
JD097653 - Sequence 78677 from Patent EP1572962.
JD327925 - Sequence 308949 from Patent EP1572962.
JD037125 - Sequence 18149 from Patent EP1572962.
JD113289 - Sequence 94313 from Patent EP1572962.
JD454355 - Sequence 435379 from Patent EP1572962.
JD274466 - Sequence 255490 from Patent EP1572962.
JD314817 - Sequence 295841 from Patent EP1572962.
JD314816 - Sequence 295840 from Patent EP1572962.
JD097654 - Sequence 78678 from Patent EP1572962.
AB464410 - Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.
JD330513 - Sequence 311537 from Patent EP1572962.
JD330514 - Sequence 311538 from Patent EP1572962.
JD330515 - Sequence 311539 from Patent EP1572962.
JD330516 - Sequence 311540 from Patent EP1572962.
JD512391 - Sequence 493415 from Patent EP1572962.
JD357505 - Sequence 338529 from Patent EP1572962.
DQ594099 - Homo sapiens piRNA piR-60211, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_003578, ZNF702P
UCSC ID: uc002qan.4
RefSeq Accession: NR_003578

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_003578.1
exon count: 4CDS single in 3' UTR: no RNA size: 3015
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 196.00frame shift in genome: no % Coverage: 99.40
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.