Human Gene ZNF761 (uc002qbo.3)
  Description: Homo sapiens tropomyosin 3 pseudogene 9 (ZNF761), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr19:53,935,227-53,947,925 Size: 12,699 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:53,935,227-53,947,925)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVHGNCLynx
PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C517826 tetrabrominated diphenyl ether 47

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.28 RPKM in Prostate
Total median expression: 119.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BX647962 - Homo sapiens mRNA; cDNA DKFZp686P2151 (from clone DKFZp686P2151).
BC103708 - Homo sapiens cDNA clone IMAGE:6142649.
AK094777 - Homo sapiens cDNA FLJ37458 fis, clone BRAWH2011166, moderately similar to TROPOMYOSIN 5, CYTOSKELETAL TYPE.
BC047783 - Homo sapiens tropomyosin 3 pseudogene, mRNA (cDNA clone IMAGE:5582532), containing frame-shift errors.
JD450543 - Sequence 431567 from Patent EP1572962.
JD453784 - Sequence 434808 from Patent EP1572962.
JD369989 - Sequence 351013 from Patent EP1572962.
JD451654 - Sequence 432678 from Patent EP1572962.
BC061910 - Homo sapiens tropomyosin 3 pseudogene, mRNA (cDNA clone IMAGE:4395952).
JD368759 - Sequence 349783 from Patent EP1572962.
JD332957 - Sequence 313981 from Patent EP1572962.
JD310630 - Sequence 291654 from Patent EP1572962.
JD207136 - Sequence 188160 from Patent EP1572962.
KJ903850 - Synthetic construct Homo sapiens clone ccsbBroadEn_13244 LOC147804 gene, encodes complete protein.
JD384990 - Sequence 366014 from Patent EP1572962.
JD424059 - Sequence 405083 from Patent EP1572962.
JD439826 - Sequence 420850 from Patent EP1572962.
JD392474 - Sequence 373498 from Patent EP1572962.
JD265312 - Sequence 246336 from Patent EP1572962.
JD448891 - Sequence 429915 from Patent EP1572962.
JD526071 - Sequence 507095 from Patent EP1572962.
JD522008 - Sequence 503032 from Patent EP1572962.
JD566545 - Sequence 547569 from Patent EP1572962.
JD566544 - Sequence 547568 from Patent EP1572962.
JD287255 - Sequence 268279 from Patent EP1572962.
JD333630 - Sequence 314654 from Patent EP1572962.
JD037575 - Sequence 18599 from Patent EP1572962.
JD539935 - Sequence 520959 from Patent EP1572962.
JD245909 - Sequence 226933 from Patent EP1572962.
JD360991 - Sequence 342015 from Patent EP1572962.
JD484542 - Sequence 465566 from Patent EP1572962.
JD532986 - Sequence 514010 from Patent EP1572962.
JD549994 - Sequence 531018 from Patent EP1572962.
JD085221 - Sequence 66245 from Patent EP1572962.
JD356075 - Sequence 337099 from Patent EP1572962.
JD164521 - Sequence 145545 from Patent EP1572962.
JD181027 - Sequence 162051 from Patent EP1572962.
JD214227 - Sequence 195251 from Patent EP1572962.
JD202570 - Sequence 183594 from Patent EP1572962.
JD084489 - Sequence 65513 from Patent EP1572962.
JD313924 - Sequence 294948 from Patent EP1572962.
JD170352 - Sequence 151376 from Patent EP1572962.
JD044833 - Sequence 25857 from Patent EP1572962.
JD098588 - Sequence 79612 from Patent EP1572962.
JD199220 - Sequence 180244 from Patent EP1572962.
JD059297 - Sequence 40321 from Patent EP1572962.
JD441130 - Sequence 422154 from Patent EP1572962.
JD527911 - Sequence 508935 from Patent EP1572962.
JD159399 - Sequence 140423 from Patent EP1572962.
JD050463 - Sequence 31487 from Patent EP1572962.
JD501408 - Sequence 482432 from Patent EP1572962.
JD079884 - Sequence 60908 from Patent EP1572962.
JD512143 - Sequence 493167 from Patent EP1572962.
JD421190 - Sequence 402214 from Patent EP1572962.
JD443922 - Sequence 424946 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_003148, TPM3P9
UCSC ID: uc002qbo.3
RefSeq Accession: NR_003148

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_003148.3
exon count: 2CDS single in 3' UTR: no RNA size: 2932
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 416.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.