Human Gene UCN (uc002rjp.1)
  Description: Homo sapiens urocortin (UCN), mRNA.
RefSeq Summary (NM_003353): This gene encodes a member of the sauvagine/corticotropin-releasing factor/urotensin I family. The encoded preproprotein is proteolytically processed to generate the mature peptide, an endogenous ligand for both corticotropin-releasing factor receptor 1 and corticotropin-releasing factor receptor 2. In the brain this peptide may be responsible for the effects of stress on appetite. This peptide may also play a role in mood disorders, neurodegeneration, and skeletal system disorders. In spite of the gene family name similarity, the product of this gene has no sequence similarity to urotensin-2. [provided by RefSeq, Feb 2016].
Transcript (Including UTRs)
   Position: hg19 chr2:27,530,265-27,531,130 Size: 866 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr2:27,530,389-27,530,763 Size: 375 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:27,530,265-27,531,130)mRNA (may differ from genome)Protein (124 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UCN1_HUMAN
DESCRIPTION: RecName: Full=Urocortin; Flags: Precursor;
FUNCTION: Acts in vitro to stimulate the secretion of adrenocorticotropic hormone (ACTH). Binds with high affinity to CRF receptor types 1, 2-alpha, and 2-beta.
SUBUNIT: Interacts with CRHR1 and CRHR2 (via their N-terminal extracellular domain).
SUBCELLULAR LOCATION: Secreted.
SIMILARITY: Belongs to the sauvagine/corticotropin-releasing factor/urotensin I family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): UCN
CDC HuGE Published Literature: UCN

-  MalaCards Disease Associations
  MalaCards Gene Search: UCN
Diseases sorted by gene-association score: ulcerative colitis (5), colitis (3), intestinal disease (3), nonsyndromic deafness (3), auditory system disease (2), inner ear disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.51 RPKM in Brain - Cortex
Total median expression: 174.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -40.50116-0.349 Picture PostScript Text
3' UTR -39.40124-0.318 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018446 - Corticotropin-releasing_fac_CS
IPR000187 - Corticotropin-releasing_factor
IPR003620 - Urocortin_CRF

Pfam Domains:
PF00473 - Corticotropin-releasing factor family

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2RMF - NMR 3N96 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P55089
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001664 G-protein coupled receptor binding
GO:0005179 hormone activity
GO:0005184 neuropeptide hormone activity
GO:0005515 protein binding
GO:0046811 histone deacetylase inhibitor activity
GO:0051430 corticotropin-releasing hormone receptor 1 binding
GO:0051431 corticotropin-releasing hormone receptor 2 binding

Biological Process:
GO:0001934 positive regulation of protein phosphorylation
GO:0001964 startle response
GO:0006954 inflammatory response
GO:0006979 response to oxidative stress
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007218 neuropeptide signaling pathway
GO:0007565 female pregnancy
GO:0007605 sensory perception of sound
GO:0007611 learning or memory
GO:0007631 feeding behavior
GO:0008306 associative learning
GO:0009060 aerobic respiration
GO:0010469 regulation of receptor activity
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0010996 response to auditory stimulus
GO:0030157 pancreatic juice secretion
GO:0030307 positive regulation of cell growth
GO:0031064 negative regulation of histone deacetylation
GO:0031175 neuron projection development
GO:0032099 negative regulation of appetite
GO:0032355 response to estradiol
GO:0032755 positive regulation of interleukin-6 production
GO:0032967 positive regulation of collagen biosynthetic process
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0034199 activation of protein kinase A activity
GO:0035176 social behavior
GO:0035483 gastric emptying
GO:0042756 drinking behavior
GO:0043066 negative regulation of apoptotic process
GO:0043117 positive regulation of vascular permeability
GO:0043950 positive regulation of cAMP-mediated signaling
GO:0045727 positive regulation of translation
GO:0045740 positive regulation of DNA replication
GO:0045776 negative regulation of blood pressure
GO:0045792 negative regulation of cell size
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046888 negative regulation of hormone secretion
GO:0048265 response to pain
GO:0051384 response to glucocorticoid
GO:0051461 positive regulation of corticotropin secretion
GO:0051966 regulation of synaptic transmission, glutamatergic
GO:0060452 positive regulation of cardiac muscle contraction
GO:0060455 negative regulation of gastric acid secretion
GO:0060547 negative regulation of necrotic cell death
GO:0060548 negative regulation of cell death
GO:0090280 positive regulation of calcium ion import
GO:1901215 negative regulation of neuron death
GO:2000252 negative regulation of feeding behavior
GO:2000987 positive regulation of behavioral fear response

Cellular Component:
GO:0005576 extracellular region
GO:0030424 axon
GO:0030425 dendrite
GO:0043025 neuronal cell body
GO:0043196 varicosity
GO:0043204 perikaryon
GO:0043679 axon terminus


-  Descriptions from all associated GenBank mRNAs
  BC104471 - Homo sapiens urocortin, mRNA (cDNA clone MGC:129975 IMAGE:40033515), complete cds.
BC104470 - Homo sapiens urocortin, mRNA (cDNA clone MGC:129974 IMAGE:40033510), complete cds.
CR542244 - Homo sapiens full open reading frame cDNA clone RZPDo834B0226D for gene UCN, urocortin; complete cds, incl. stopcodon.
KJ905335 - Synthetic construct Homo sapiens clone ccsbBroadEn_14874 UCN gene, encodes complete protein.
JD103356 - Sequence 84380 from Patent EP1572962.
JD193864 - Sequence 174888 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P55089 (Reactome details) participates in the following event(s):

R-HSA-420173 CRHR1,CRHR2-1 binds CRH,UCN
R-HSA-8937631 CRHR2-2 binds CRH,UCN,UCN2,UCN3
R-HSA-373080 Class B/2 (Secretin family receptors)
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: NM_003353, NP_003344, P55089, Q6FG64, UCN1_HUMAN
UCSC ID: uc002rjp.1
RefSeq Accession: NM_003353
Protein: P55089 (aka UCN1_HUMAN)
CCDS: CCDS1747.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_003353.2
exon count: 2CDS single in 3' UTR: no RNA size: 615
ORF size: 375CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 950.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.