Human Gene MEMO1 (uc002rny.3)
  Description: Homo sapiens mediator of cell motility 1 (MEMO1), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr2:32,092,894-32,236,105 Size: 143,212 Total Exon Count: 7 Strand: -


Page IndexSequence and LinksPrimersGenetic AssociationsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:32,092,894-32,236,105)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVHGNCLynx
PubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): MEMO1
CDC HuGE Published Literature: MEMO1

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.03 RPKM in Testis
Total median expression: 98.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK022169 - Homo sapiens cDNA FLJ12107 fis, clone HEMBB1002705, highly similar to Homo sapiens CGI-27 protein mRNA.
AL161966 - Homo sapiens mRNA; cDNA DKFZp434I0135 (from clone DKFZp434I0135).
AF132961 - Homo sapiens CGI-27 protein mRNA, complete cds.
AF363446 - Homo sapiens C21orf19-like protein mRNA, complete cds.
BC018733 - Homo sapiens mediator of cell motility 1, mRNA (cDNA clone MGC:31852 IMAGE:4851517), complete cds.
AB041019 - Homo sapiens C2orf4b mRNA, complete cds, chromosome 2 open reading frame 4b.
AB041018 - Homo sapiens C2orf4a mRNA, complete cds, chromosome 2 open reading frame 4a.
BC070046 - Homo sapiens mediator of cell motility 1, mRNA (cDNA clone MGC:87113 IMAGE:5273070), complete cds.
AK057760 - Homo sapiens cDNA FLJ25031 fis, clone CBL02658.
BC094681 - Homo sapiens mediator of cell motility 1, mRNA (cDNA clone MGC:102743 IMAGE:6205399), complete cds.
AK297128 - Homo sapiens cDNA FLJ58197 complete cds.
AK290753 - Homo sapiens cDNA FLJ76141 complete cds.
BC036262 - Homo sapiens mediator of cell motility 1, mRNA (cDNA clone IMAGE:3895306), **** WARNING: chimeric clone ****.
AF529368 - Homo sapiens NS5ATP7 (NS5ATP7) mRNA, complete cds.
KJ898816 - Synthetic construct Homo sapiens clone ccsbBroadEn_08210 MEMO1 gene, encodes complete protein.
KJ906149 - Synthetic construct Homo sapiens clone ccsbBroadEn_15819 MEMO1 gene, encodes complete protein.
DQ892034 - Synthetic construct clone IMAGE:100004664; FLH182527.01X; RZPDo839H02138D chromosome 2 open reading frame 4 (C2orf4) gene, encodes complete protein.
DQ895225 - Synthetic construct Homo sapiens clone IMAGE:100009685; FLH182523.01L; RZPDo839H02137D chromosome 2 open reading frame 4 (C2orf4) gene, encodes complete protein.
CU687026 - Synthetic construct Homo sapiens gateway clone IMAGE:100022773 5' read MEMO1 mRNA.
AK295755 - Homo sapiens cDNA FLJ58897 complete cds, moderately similar to Dpy-30-like protein.
JD305945 - Sequence 286969 from Patent EP1572962.
JD268771 - Sequence 249795 from Patent EP1572962.
JD371932 - Sequence 352956 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK057760
UCSC ID: uc002rny.3
RefSeq Accession: NM_015955

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK057760.1
exon count: 7CDS single in 3' UTR: no RNA size: 1247
ORF size: 0CDS single in intron: no Alignment % ID: 99.76
txCdsPredict score: 371.50frame shift in genome: no % Coverage: 99.60
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.