Human Gene C2orf73 (uc002rxt.1)
Description: Homo sapiens chromosome 2 open reading frame 73 (C2orf73), mRNA.
Transcript (Including UTRs)
Position: hg19 chr2:54,558,071-54,588,714 Size: 30,644 Total Exon Count: 5 Strand: +
Coding Region
Position: hg19 chr2:54,558,113-54,587,699 Size: 29,587 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CB073_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C2orf73;
SEQUENCE CAUTION: Sequence=AAH31669.1; Type=Erroneous initiation;
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF15667 - Protein of unknown function with motif GDWWSH
ModBase Predicted Comparative 3D Structure on Q8N5S3
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK097617 - Homo sapiens cDNA FLJ40298 fis, clone TESTI2028985.BC126244 - Homo sapiens chromosome 2 open reading frame 73, mRNA (cDNA clone MGC:161522 IMAGE:8991960), complete cds.BC126246 - Homo sapiens chromosome 2 open reading frame 73, mRNA (cDNA clone MGC:161524 IMAGE:8991962), complete cds.BC144191 - Homo sapiens chromosome 2 open reading frame 73, mRNA (cDNA clone IMAGE:9052711), complete cds.BC144192 - Homo sapiens chromosome 2 open reading frame 73, mRNA (cDNA clone MGC:177729 IMAGE:9052712), complete cds.JD507531 - Sequence 488555 from Patent EP1572962.BC031669 - Homo sapiens chromosome 2 open reading frame 73, mRNA (cDNA clone IMAGE:5163761), partial cds.HQ258071 - Synthetic construct Homo sapiens clone IMAGE:100072380 Unknown protein gene, encodes complete protein.HQ258566 - Synthetic construct Homo sapiens clone IMAGE:100073080 Unknown protein gene, encodes complete protein.KJ903755 - Synthetic construct Homo sapiens clone ccsbBroadEn_13149 C2orf73 gene, encodes complete protein.KJ906418 - Synthetic construct Homo sapiens clone ccsbBroadEn_16088 C2orf73 gene, encodes complete protein.KJ906419 - Synthetic construct Homo sapiens clone ccsbBroadEn_16089 C2orf73 gene, encodes complete protein.JD095844 - Sequence 76868 from Patent EP1572962.JD287558 - Sequence 268582 from Patent EP1572962.JD291510 - Sequence 272534 from Patent EP1572962.JD503903 - Sequence 484927 from Patent EP1572962.JD049573 - Sequence 30597 from Patent EP1572962.JD050441 - Sequence 31465 from Patent EP1572962.JD414187 - Sequence 395211 from Patent EP1572962.JD067614 - Sequence 48638 from Patent EP1572962.JD451375 - Sequence 432399 from Patent EP1572962.JD499397 - Sequence 480421 from Patent EP1572962.JD338832 - Sequence 319856 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A0AV79, A0AV81, CB073_HUMAN, NM_001100396, NP_001093866, Q8N5S3, Q8N7V4UCSC ID: uc002rxt.1RefSeq Accession: NM_001100396
Protein: Q8N5S3
(aka CB073_HUMAN)
CCDS: CCDS46285.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001100396.1
exon count:
5 CDS single in 3' UTR:
no
RNA size:
1921
ORF size:
864 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1925.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.