Human Gene RAB6D (uc002tsr.3)
Description: Homo sapiens RAB6C-like (RAB6D), mRNA.
Transcript (Including UTRs)
Position: hg19 chr2:132,118,065-132,121,731 Size: 3,667 Total Exon Count: 1 Strand: -
Coding Region
Position: hg19 chr2:132,120,529-132,121,293 Size: 765 Coding Exon Count: 1
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Q53S08_HUMAN
DESCRIPTION: SubName: Full=Putative uncharacterized protein RAB6C; SubName: Full=Rab6C; SubName: Full=WTH3DI;
SIMILARITY: Belongs to the small GTPase superfamily. Rab family.
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR003579 - Small_GTPase_Rab_type
Pfam Domains: PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF08477 - Ras of Complex, Roc, domain of DAPkinase
SCOP Domains: 52540 - P-loop containing nucleoside triphosphate hydrolases
ModBase Predicted Comparative 3D Structure on Q53S08
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AB232598 - Homo sapiens Rab6C mRNA for Rab6C, complete cds.BC148667 - Synthetic construct Homo sapiens clone IMAGE:100015622, MGC:183133 RAB6C-like (LOC150786) mRNA, encodes complete protein.BC153205 - Synthetic construct Homo sapiens clone IMAGE:100016523, MGC:184337 RAB6C-like (LOC150786) mRNA, encodes complete protein.JD331496 - Sequence 312520 from Patent EP1572962.JD259950 - Sequence 240974 from Patent EP1572962.JD345981 - Sequence 327005 from Patent EP1572962.JD046875 - Sequence 27899 from Patent EP1572962.JD042212 - Sequence 23236 from Patent EP1572962.JD309441 - Sequence 290465 from Patent EP1572962.JD083997 - Sequence 65021 from Patent EP1572962.JD088047 - Sequence 69071 from Patent EP1572962.JD084244 - Sequence 65268 from Patent EP1572962.JD539766 - Sequence 520790 from Patent EP1572962.JD181946 - Sequence 162970 from Patent EP1572962.JD316041 - Sequence 297065 from Patent EP1572962.JD272194 - Sequence 253218 from Patent EP1572962.JD403165 - Sequence 384189 from Patent EP1572962.JD424560 - Sequence 405584 from Patent EP1572962.JD346028 - Sequence 327052 from Patent EP1572962.JD035875 - Sequence 16899 from Patent EP1572962.JD477871 - Sequence 458895 from Patent EP1572962.JD488241 - Sequence 469265 from Patent EP1572962.JD543784 - Sequence 524808 from Patent EP1572962.JD132187 - Sequence 113211 from Patent EP1572962.JD175394 - Sequence 156418 from Patent EP1572962.JD205166 - Sequence 186190 from Patent EP1572962.JD200169 - Sequence 181193 from Patent EP1572962.JD462667 - Sequence 443691 from Patent EP1572962.JD214406 - Sequence 195430 from Patent EP1572962.JD489538 - Sequence 470562 from Patent EP1572962.JD457939 - Sequence 438963 from Patent EP1572962.JD218297 - Sequence 199321 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: NM_001077637, NP_001071105, Q53S08, Q53S08_HUMAN, RAB6C, Rab6C, WTH3DIUCSC ID: uc002tsr.3RefSeq Accession: NM_001077637
Protein: Q53S08
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001077637.1
exon count:
1 CDS single in 3' UTR:
no
RNA size:
3672
ORF size:
765 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
965.00 frame shift in genome:
no
% Coverage:
99.86
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.