Human Gene CDK15 (uc002uyu.2)
  Description: Homo sapiens cyclin-dependent kinase 15 (CDK15), transcript variant 3, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr2:202,719,513-202,760,273 Size: 40,761 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:202,719,513-202,760,273)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.46 RPKM in Ovary
Total median expression: 12.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK292434 - Homo sapiens cDNA FLJ77382 complete cds, highly similar to Homo sapiens amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 7 (ALS2CR7), mRNA.
AK310050 - Homo sapiens cDNA, FLJ17092.
AB053308 - Homo sapiens ALS2CR7 mRNA, complete cds.
AX772791 - Sequence 1 from Patent WO03046167.
AK131512 - Homo sapiens cDNA FLJ16732 fis, clone BNGH42005017, moderately similar to SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-).
BX647394 - Homo sapiens mRNA; cDNA DKFZp686K20144 (from clone DKFZp686K20144).
BC038807 - Homo sapiens PFTAIRE protein kinase 2, mRNA (cDNA clone MGC:46456 IMAGE:5200755), complete cds.
EU831828 - Synthetic construct Homo sapiens clone HAIB:100066857; DKFZo004A0522 PFTAIRE protein kinase 2 protein (PFTK2) gene, encodes complete protein.
EU831752 - Synthetic construct Homo sapiens clone HAIB:100066781; DKFZo008A0521 PFTAIRE protein kinase 2 protein (PFTK2) gene, encodes complete protein.
EU831827 - Synthetic construct Homo sapiens clone HAIB:100066856; DKFZo004A0422 PFTAIRE protein kinase 2 protein (PFTK2) gene, encodes complete protein.
EU831751 - Synthetic construct Homo sapiens clone HAIB:100066780; DKFZo008A0421 PFTAIRE protein kinase 2 protein (PFTK2) gene, encodes complete protein.
KJ903116 - Synthetic construct Homo sapiens clone ccsbBroadEn_12510 CDK15 gene, encodes complete protein.
KJ905528 - Synthetic construct Homo sapiens clone ccsbBroadEn_15139 CDK15 gene, encodes complete protein.
AK091710 - Homo sapiens cDNA FLJ34391 fis, clone HCHON2000199.
JD358664 - Sequence 339688 from Patent EP1572962.
JD298546 - Sequence 279570 from Patent EP1572962.
JD142750 - Sequence 123774 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK091710, uc002uyu.1
UCSC ID: uc002uyu.2
RefSeq Accession: NM_139158

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK091710.1
exon count: 4CDS single in 3' UTR: no RNA size: 2422
ORF size: 0CDS single in intron: no Alignment % ID: 99.79
txCdsPredict score: 347.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 84# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.