Human Gene SS18L1 (uc002ybz.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Genetic Association Studies of Complex Diseases and Disorders
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Genetic Association Database (archive): SS18L1
CDC HuGE Published Literature: SS18L1
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MalaCards Disease Associations
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Comparative Toxicogenomics Database (CTD)
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AK299881 - Homo sapiens cDNA FLJ58470 complete cds, highly similar to SS18-like protein 1. AK291485 - Homo sapiens cDNA FLJ77310 complete cds, highly similar to Homo sapiens synovial sarcoma translocation gene on chromosome 18-like 1 (SS18L1), transcript variant 2, mRNA. AK125656 - Homo sapiens cDNA FLJ43668 fis, clone SYNOV4007360, highly similar to SS18-like protein 1. BC034494 - Homo sapiens synovial sarcoma translocation gene on chromosome 18-like 1, mRNA (cDNA clone MGC:26711 IMAGE:4823298), complete cds. BX640848 - Homo sapiens mRNA; cDNA DKFZp686H23229 (from clone DKFZp686H23229). AK308765 - Homo sapiens cDNA, FLJ98806. BC068993 - Homo sapiens synovial sarcoma translocation gene on chromosome 18-like 1, mRNA (cDNA clone MGC:78386 IMAGE:5094932), complete cds. AB014593 - Homo sapiens KIAA0693 mRNA for KIAA0693 protein. EU176499 - Synthetic construct Homo sapiens clone IMAGE:100011353; FLH166986.01L; RZPDo839B04253D synovial sarcoma translocation gene on chromosome 18-like 1 (SS18L1) gene, encodes complete protein. DQ890908 - Synthetic construct clone IMAGE:100003538; FLH166987.01X; RZPDo839F1088D synovial sarcoma translocation gene on chromosome 18-like 1 (SS18L1) gene, encodes complete protein. AB383958 - Synthetic construct DNA, clone: pF1KSDA0693, Homo sapiens SS18L1 gene for SS18-like protein 1, complete cds, without stop codon, in Flexi system. KJ906110 - Synthetic construct Homo sapiens clone ccsbBroadEn_15780 SS18L1 gene, encodes complete protein. CU686691 - Synthetic construct Homo sapiens gateway clone IMAGE:100023147 5' read SS18L1 mRNA. AY203931 - Homo sapiens LP2261 mRNA, complete cds. JD549882 - Sequence 530906 from Patent EP1572962. JD438765 - Sequence 419789 from Patent EP1572962. JD564769 - Sequence 545793 from Patent EP1572962. JD082452 - Sequence 63476 from Patent EP1572962. JD432382 - Sequence 413406 from Patent EP1572962. JD217822 - Sequence 198846 from Patent EP1572962. JD144768 - Sequence 125792 from Patent EP1572962. JD231983 - Sequence 213007 from Patent EP1572962. JD279247 - Sequence 260271 from Patent EP1572962. JD314121 - Sequence 295145 from Patent EP1572962. JD142618 - Sequence 123642 from Patent EP1572962. JD196161 - Sequence 177185 from Patent EP1572962. JD142619 - Sequence 123643 from Patent EP1572962. JD223427 - Sequence 204451 from Patent EP1572962. JD140170 - Sequence 121194 from Patent EP1572962. JD238133 - Sequence 219157 from Patent EP1572962. JD481335 - Sequence 462359 from Patent EP1572962. JD179678 - Sequence 160702 from Patent EP1572962. JD420110 - Sequence 401134 from Patent EP1572962. JD438837 - Sequence 419861 from Patent EP1572962. JD384508 - Sequence 365532 from Patent EP1572962. JD486780 - Sequence 467804 from Patent EP1572962. JD226352 - Sequence 207376 from Patent EP1572962. JD243957 - Sequence 224981 from Patent EP1572962. JD454378 - Sequence 435402 from Patent EP1572962. JD135811 - Sequence 116835 from Patent EP1572962. JD047628 - Sequence 28652 from Patent EP1572962. JD197085 - Sequence 178109 from Patent EP1572962. JD440901 - Sequence 421925 from Patent EP1572962. JD529117 - Sequence 510141 from Patent EP1572962. JD169196 - Sequence 150220 from Patent EP1572962. JD041228 - Sequence 22252 from Patent EP1572962. JD096409 - Sequence 77433 from Patent EP1572962. JD522771 - Sequence 503795 from Patent EP1572962. JD139832 - Sequence 120856 from Patent EP1572962. JD451709 - Sequence 432733 from Patent EP1572962. JD365219 - Sequence 346243 from Patent EP1572962. JD451854 - Sequence 432878 from Patent EP1572962. JD127809 - Sequence 108833 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: BC068993 UCSC ID: uc002ybz.1 RefSeq Accession: NM_198935
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Gene Model Information
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category:
| nearCoding
| nonsense-mediated-decay:
| yes
| RNA accession:
| BC068993.1
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exon count:
| 13 | CDS single in 3' UTR:
| no
| RNA size:
| 1901 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.95 |
txCdsPredict score:
| 1914.00 | frame shift in genome:
| no
| % Coverage:
| 98.63 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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